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BaseInfo

ncRNA ID	novel_zma_miR3253
Species	Zea mays
Class	miRNA
Genome position	Chr5:220205501-220205588 [+]
Reference genome	RefGen_v4
Source	SRR2089715;SRR2089700
Length	23
Mature sequence(if miRNA)	1 - ACCGAAGGGGAUUGGAGGGGCUA - 23
Stem-loop(if miRNA)	--      GGG                              CAA   ACCGAA   GAUUGGAGGGGCUAGAAUCCCUUUCUUAUU   A   ||||||   ||||||||||||||||||||||||||||||   UGGCUU   CUAACCUCCCUGAUCUUAGGGAAAGAAUAA   A UU      ACA                              AUU
Stem-loop sequence	ACCGAAGGGGAUUGGAGGGGCUAGAAUCCCUUUCUUAUUCAAAAUUAAAUAAGAAAGGGAUUCUAGUCCCUCCAAUCACAUUCGGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020539411.1	ncRNA:23   AUCGGGGAGGUUAGGGGAAGCCA   1   ||||||||||||||||||*|||| targets:3500   UAGCCCCUCCAAUCCCCUCCGGU   3522 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:23   AUCGGGGAGGUUAGGGGAAGCCA   1   ||||||||||||||||||*|||| targets:3535   UAGCCCCUCCAAUCCCCUCCGGU   3557 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:23   AUCGGGGAGGUUAGGGGAAGCCA   1   ||||||||=|||||||||*|||| targets:1113   UAGCCCCUUCAAUCCCCUCCGGU   1135 Target Full Sequence	2.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:23   AUCGGGGAGGUUAGGGGAAGCCA   1   ||*|||||||||||||||*|||| targets:1031   UAACCCCUCCAAUCCCCUCCGGU   1053 Target Full Sequence	1.5	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
BT065170.1	ncRNA:23   AUCGGGGAGGUUAGGGGAAGCCA   1   ||*|||||||||||||||*|||* targets:684   UAUCCCCUCCAAUCCCCUCCGGG   706 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:23   AUCGGGGAGGUUAGGGGAAGCCA   1   ||*|||||||||||||||*|||* targets:1564   UAUCCCCUCCAAUCCCCUCCGGG   1586 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:23   AUCGGGGAGGUUAGGGGAAGCCA   1   ||*|||||||||||||||*|||* targets:1584   UAUCCCCUCCAAUCCCCUCCGGG   1606 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:23   AUCGGGGAGGUUAGGGGAAGCCA   1   ||*|||||||||||||||*|||* targets:1608   UAUCCCCUCCAAUCCCCUCCGGG   1630 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:23   AUCGGGGAGGUUAGGGGAAGCCA   1   ||*|||||||||||||||*|||* targets:1641   UAUCCCCUCCAAUCCCCUCCGGG   1663 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
LQ238074.1	ncRNA:23   AUCGGGGAGGUUAGGGGAAGCCA   1   *|*|=||||||||||||||||*| targets:89   AAUCUCCUCCAAUCCCCUUCGAU   111 Target Full Sequence	2.5	Sequence 4069 from Patent EP2985353	NA	coding protein	psRNATarget
HI405947.1	ncRNA:23   AUCGGGGAGGUUAGGGGAAGCCA   1   *|*|=||||||||||||||||*| targets:89   AAUCUCCUCCAAUCCCCUUCGAU   111 Target Full Sequence	2.5	Sequence 4072 from Patent EP2074227	NA	coding protein	psRNATarget
HI405944.1	ncRNA:23   AUCGGGGAGGUUAGGGGAAGCCA   1   *|*|=||||||||||||||||*| targets:89   AAUCUCCUCCAAUCCCCUUCGAU   111 Target Full Sequence	2.5	Sequence 4069 from Patent EP2074227	NA	coding protein	psRNATarget
JB166408.1	ncRNA:23   AUCGGGGAGGUUAGGGGAAGCCA   1   *|*|=||||||||||||||||*| targets:89   AAUCUCCUCCAAUCCCCUUCGAU   111 Target Full Sequence	2.5	Sequence 4072 from Patent EP2559767	NA	coding protein	psRNATarget
JB166405.1	ncRNA:23   AUCGGGGAGGUUAGGGGAAGCCA   1   *|*|=||||||||||||||||*| targets:89   AAUCUCCUCCAAUCCCCUUCGAU   111 Target Full Sequence	2.5	Sequence 4069 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238077.1	ncRNA:23   AUCGGGGAGGUUAGGGGAAGCCA   1   *|*|=||||||||||||||||*| targets:89   AAUCUCCUCCAAUCCCCUUCGAU   111 Target Full Sequence	2.5	Sequence 4072 from Patent EP2985353	NA	coding protein	psRNATarget
AY106606.2	ncRNA:23   AUCGGGGAGGUUAGGGGAAGCCA   1   *|*=|||||=|||||||||||*| targets:502   AAUUCCCUCUAAUCCCCUUCGAU   524 Target Full Sequence	2.5	Zea mays PCO135617 mRNA sequence	NA	coding protein	psRNATarget
BT085493.1	ncRNA:23   AUCGGGGAGGUUAGGGGAAGCCA   1   *|*=|||||=|||||||||||*| targets:782   AAUUCCCUCUAAUCCCCUUCGAU   804 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0020K17 mRNA, complete cds	NA	coding protein	psRNATarget
AY107031.1	ncRNA:23   AUCGGGGAGGUUAGGGGAAGCCA   1   ****=|=|||||||||||||||* targets:181   CCAAUCUUCCAAUCCCCUUCGGC   203 Target Full Sequence	3.0	Zea mays PCO139091 mRNA sequence	NA	coding protein	psRNATarget
XM_020545690.1	ncRNA:23   AUCGGGGAGGUUAGGGGAAGCCA   1   ****=|=|||||||||||||||* targets:208   CCAAUCUUCCAAUCCCCUUCGGC   230 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100193983 (LOC100193983), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT065359.1	ncRNA:23   AUCGGGGAGGUUAGGGGAAGCCA   1   ****=|=|||||||||||||||* targets:54   CCAAUCUUCCAAUCCCCUUCGGC   76 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0119E08 mRNA, complete cds	NA	coding protein	psRNATarget
BT065344.1	ncRNA:23   AUCGGGGAGGUUAGGGGAAGCCA   1   ****=|=|||||||||||||||* targets:66   CCAAUCUUCCAAUCCCCUUCGGC   88 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0108N19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139049.1	ncRNA:23   AUCGGGGAGGUUAGGGGAAGCCA   1   ****=|=|||||||||||||||* targets:174   CCAAUCUUCCAAUCCCCUUCGGC   196 Target Full Sequence	3.0	Zea mays uncharacterized LOC100193983 (LOC100193983), mRNA	NA	coding protein	psRNATarget
BT036388.1	ncRNA:23   AUCGGGGAGGUUAGGGGAAGCCA   1   ****=|=|||||||||||||||* targets:174   CCAAUCUUCCAAUCCCCUUCGGC   196 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0110J03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545658.1	ncRNA:23   AUCGGGGAGGUUAGGGGAAGCCA   1   ****=|=|||||||||||||||* targets:206   CCAAUCUUCCAAUCCCCUUCGGC   228 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100193983 (LOC100193983), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU961881.1	ncRNA:23   AUCGGGGAGGUUAGGGGAAGCCA   1   ****=|=|||||||||||||||* targets:208   CCAAUCUUCCAAUCCCCUUCGGC   230 Target Full Sequence	3.0	Zea mays clone 238865 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget