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BaseInfo

ncRNA ID novel_zma_miR3249
Species Zea mays
Class miRNA
Genome position Chr5:188185925-188186035 [+]
Reference genome RefGen_v4
Source SRR2089715
Length 24
Mature sequence(if miRNA) 1 - GAUUUGGUGACAAGGGAAUCCCGG - 24
Stem-loop(if miRNA) --           AA    A                   U              AA
  GAUUUGGUGAC  GGGA UCCCGGGAGGAUUGGAGGG AUUGAGGGGGAAAU  A
  |||||||||||  |||| ||||||||||||||||||| ||||||||||||||
  CUAAACCACUG  CCCU AGGGCCCUCCUAACCUCCC UAACUCCCCCUUUA  C
GA           GG    -                   C              AU
Stem-loop sequence GAUUUGGUGACAAGGGAAUCCCGGGAGGAUUGGAGGGUAUUGAGGGGGAAAUAAACUAAUUUCCCCCUCAAUCCCCUCCAAUCCUCCCGGGAUCCCGGGUCACCAAAUCAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ241793.1
ncRNA:24   GGCCCUAAGGGAACAGUGGUUUAG   1
  |||||||*||||||||||||||||
targets:92   CCGGGAUCCCCUUGUCACCAAAUC   115

1.0 Sequence 7788 from Patent EP2985353 NA coding protein psRNATarget
JB170124.1
ncRNA:24   GGCCCUAAGGGAACAGUGGUUUAG   1
  |||||||*||||||||||||||||
targets:92   CCGGGAUCCCCUUGUCACCAAAUC   115

1.0 Sequence 7788 from Patent EP2559767 NA coding protein psRNATarget
HI409663.1
ncRNA:24   GGCCCUAAGGGAACAGUGGUUUAG   1
  |||||||*||||||||||||||||
targets:92   CCGGGAUCCCCUUGUCACCAAAUC   115

1.0 Sequence 7788 from Patent EP2074227 NA coding protein psRNATarget
EU961132.1
ncRNA:24   GGCCCUAAGGGAACAGUGGUUUAG   1
  |||||||*||||||||||||||||
targets:846   CCGGGAUCCCCUUGUCACCAAAUC   869

1.0 Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds NA coding protein psRNATarget
BT040716.2
ncRNA:24   GGCCCUAAGGGAACAGUGGUUUAG   1
  |||||||*||||||||||||||||
targets:885   CCGGGAUCCCCUUGUCACCAAAUC   908

1.0 Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds NA coding protein psRNATarget
BT066291.1
ncRNA:24   GGCCCUAAGGGAACAGUGGUUUAG   1
  |||||||*||||||||||||||||
targets:890   CCGGGAUCCCCUUGUCACCAAAUC   913

1.0 Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds NA coding protein psRNATarget
NM_001147738.1
ncRNA:24   GGCCCUAAGGGAACAGUGGUUUAG   1
  |||||||*||||||||||||||||
targets:890   CCGGGAUCCCCUUGUCACCAAAUC   913

1.0 Zea mays putative glutathione peroxidase (LOC100273297), mRNA NA coding protein psRNATarget
EU953234.1
ncRNA:24   GGCCCUAAGGGAACAGUGGUUUAG   1
  |||||||*||||||||||||||||
targets:1495   CCGGGAUCCCCUUGUCACCAAAUC   1518

1.0 Zea mays clone 1392496 mRNA sequence NA coding protein psRNATarget
EZ098881.1
ncRNA:24   GGCCCUAAGGGAACAGUGGUUUAG   1
  =||||||*||||||||||||||||
targets:102   UCGGGAUCCCCUUGUCACCAAAUC   125

1.0 TSA: Zea mays contig34536, mRNA sequence NA coding protein psRNATarget
EU973567.1
ncRNA:24   GGCCCUAAGGGAACAGUGGUUUAG   1
  *||||||*||||||||||||||||
targets:110   ACGGGAUCCCCUUGUCACCAAAUC   133

1.0 Zea mays clone 401029 mRNA sequence NA coding protein psRNATarget
EZ106816.1
ncRNA:24   GGCCCUAAGGGAACAGUGGUUUAG   1
  |||*|||*||||||||||||||||
targets:296   CCGUGAUCCCCUUGUCACCAAAUC   319

1.0 TSA: Zea mays contig42474, mRNA sequence NA coding protein psRNATarget
XM_008649581.2
ncRNA:24   GGCCCUAAGGGAACAGUGGUUUAG   1
  |||*|||*||||||||=|||||||
targets:1823   CCGUGAUCCCCUUGUCGCCAAAUC   1846

2.5 PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA NA coding protein psRNATarget
EU945995.1
ncRNA:24   GGCCCUAAGGGAACAGUGGUUUAG   1
  |||*|||*|||||||||||||||*
targets:399   CCGUGAUCCCCUUGUCACCAAAUG   422

2.0 Zea mays clone 293035 mRNA sequence NA coding protein psRNATarget
XM_020539542.1
ncRNA:24   GGCCCUAAGGGAACAGUGGUUUAG   1
  |||*|||*|*||||||||||||||
targets:156   CCGUGAUCCACUUGUCACCAAAUC   179

2.0 PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008651348.2
ncRNA:24   GGCCCUAAGGGAACAGUGGUUUAG   1
  |||*|||*|*||||||||||||||
targets:156   CCGUGAUCCACUUGUCACCAAAUC   179

2.0 PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020539541.1
ncRNA:24   GGCCCUAAGGGAACAGUGGUUUAG   1
  |||*|||*|*||||||||||||||
targets:156   CCGUGAUCCACUUGUCACCAAAUC   179

2.0 PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020551510.1
ncRNA:24   GGCCCUAAGGGAACAGUGGUUUAG   1
  ||***|||||||||||||||||**
targets:1582   CCUCAAUUCCCUUGUCACCAAAGG   1605

2.5 PREDICTED: Zea mays putative ACT-domain containing protein kinase family protein (LOC100280199), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547639.1
ncRNA:24   GGCCCUAAGGGAACAGUGGUUUAG   1
  ||***|||||||||||||||||*=
targets:1560   CCACAAUUCCCUUGUCACCAAACU   1583

2.5 PREDICTED: Zea mays uncharacterized LOC100278581 (LOC100278581), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020547637.1
ncRNA:24   GGCCCUAAGGGAACAGUGGUUUAG   1
  ||***|||||||||||||||||*=
targets:1560   CCACAAUUCCCUUGUCACCAAACU   1583

2.5 PREDICTED: Zea mays uncharacterized LOC100278581 (LOC100278581), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547640.1
ncRNA:24   GGCCCUAAGGGAACAGUGGUUUAG   1
  ||***|||||||||||||||||*=
targets:1560   CCACAAUUCCCUUGUCACCAAACU   1583

2.5 PREDICTED: Zea mays uncharacterized LOC100278581 (LOC100278581), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020547638.1
ncRNA:24   GGCCCUAAGGGAACAGUGGUUUAG   1
  ||***|||||||||||||||||*=
targets:1560   CCACAAUUCCCUUGUCACCAAACU   1583

2.5 PREDICTED: Zea mays uncharacterized LOC100278581 (LOC100278581), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020547636.1
ncRNA:24   GGCCCUAAGGGAACAGUGGUUUAG   1
  ||***|||||||||||||||||*=
targets:1560   CCACAAUUCCCUUGUCACCAAACU   1583

2.5 PREDICTED: Zea mays uncharacterized LOC100278581 (LOC100278581), transcript variant X1, mRNA NA coding protein psRNATarget
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