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BaseInfo

ncRNA ID	novel_zma_miR3248
Species	Zea mays
Class	miRNA
Genome position	Chr5:177630475-177630521 [+]
Reference genome	RefGen_v4
Source	SRR2089715
Length	23
Mature sequence(if miRNA)	1 - AAUUCAUCGGACUGUUCGGUGGU - 23
Stem-loop(if miRNA)	--AA         CU             UUCAUCGGA  GUUCGGUGG     |||||||||  ||||||||U     GAGUGGCCU  CAGGCCACG AACC         AU
Stem-loop sequence	AAUUCAUCGGACUGUUCGGUGGUGCACCGGACUAUCCGGUGAGCCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT086229.2	ncRNA:23   UGGUGGCUUGUCAGGCUACUUAA   1   |||||||=||||||||=|||||| targets:653   ACCACCGGACAGUCCGGUGAAUU   675 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
U41079.1	ncRNA:23   UG-GUGGCUUGUCAGGCUACUUAA   1   ||-|||||=||||||||=|||||| targets:29   ACUCACCGGACAGUCCGGUGAAUU   52 Target Full Sequence	2.5	Zea mays copia-type retroelement PREM-2, partial sequence	NA	coding protein	psRNATarget
BT069074.2	ncRNA:23   UGGUGGCUUGUCAGGCUACUUAA   1   *=|||||=||||||||=|||||| targets:686   UUCACCGGACAGUCCGGUGAAUU   708 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
JB170098.1	ncRNA:21   GUGGCUUGUCAGGCUACUUAA   1   |||||=||||||||=|||||| targets:1   CACCGGACAGUCCGGUGAAUU   21 Target Full Sequence	2.5	Sequence 7762 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241767.1	ncRNA:21   GUGGCUUGUCAGGCUACUUAA   1   |||||=||||||||=|||||| targets:1   CACCGGACAGUCCGGUGAAUU   21 Target Full Sequence	2.5	Sequence 7762 from Patent EP2985353	NA	coding protein	psRNATarget
HI409637.1	ncRNA:21   GUGGCUUGUCAGGCUACUUAA   1   |||||=||||||||=|||||| targets:1   CACCGGACAGUCCGGUGAAUU   21 Target Full Sequence	2.5	Sequence 7762 from Patent EP2074227	NA	coding protein	psRNATarget
HI409410.1	ncRNA:23   UGGUGGCUUGUCAGGCUACUUAA   1   **|||||=||||||||=|||||| targets:16   CACACCGGACAGUCCGGUGAAUU   38 Target Full Sequence	2.5	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:23   UGGUGGCUUGUCAGGCUACUUAA   1   **|||||=||||||||=|||||| targets:16   CACACCGGACAGUCCGGUGAAUU   38 Target Full Sequence	2.5	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
JB169871.1	ncRNA:23   UGGUGGCUUGUCAGGCUACUUAA   1   **|||||=||||||||=|||||| targets:16   CACACCGGACAGUCCGGUGAAUU   38 Target Full Sequence	2.5	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
BT068112.2	ncRNA:23   UGGUGGCUUGUCAGGCUACUUAA   1   **|||||=||||||||=|||||| targets:605   CACACCGGACAGUCCGGUGAAUU   627 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:23   UGGUGGCUUGUCAGGCUACUUAA   1   **|||||=||||||||=|||||| targets:741   CACACCGGACAGUCCGGUGAAUU   763 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:23   UGGUGGCUUGUCAGGCUACUUAA   1   **|||||=||||||||=|||||| targets:741   CACACCGGACAGUCCGGUGAAUU   763 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT083610.2	ncRNA:23   UGGUGGCUUGUCAGGCUACUUAA   1   **|||||=||||||||=|||||| targets:701   CACACCGGACAGUCCGGUGAAUU   723 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:23   UGGUGGCUUGUCAGGCUACUUAA   1   **|||||=||||||||=|||||| targets:827   UGCACCGGACAGUCCGGUGAAUU   849 Target Full Sequence	2.5	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
BT061709.2	ncRNA:23   UGGUGGCUUGUCAGGCUACUUAA   1   **|||||=||||||||=|||||| targets:827   UGCACCGGACAGUCCGGUGAAUU   849 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:23   UGGUGGCUUGUCAGGCUACUUAA   1   **|||||=||||||||=|||||| targets:702   CACACCGGACAGUCCGGUGAAUU   724 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:23   UGGUGGCUUGUCAGGCUACUUAA   1   **|||||=||||||||=|||||| targets:702   CACACCGGACAGUCCGGUGAAUU   724 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT061124.2	ncRNA:23   UGGUGGCUUGUCAGGCUACUUAA   1   **|||||=||||||||=|||||| targets:566   CACACCGGACAGUCCGGUGAAUU   588 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:23   UGGUGGCUUGUCAGGCUACUUAA   1   **|||||=||||||||=|||||| targets:566   CACACCGGACAGUCCGGUGAAUU   588 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
EU940831.1	ncRNA:23   UGGUGGCUUGUCAGGCUACUUAA   1   **|||||=||||||||=|||||| targets:414   CACACCGGACAGUCCGGUGAAUU   436 Target Full Sequence	2.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:23   UGGUGGCUUGUCAGGCUACUUAA   1   **|||||=||||||||=|||||| targets:4614   CACACCGGACAGUCCGGUGAAUU   4636 Target Full Sequence	2.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
LQ242120.1	ncRNA:23   UGGUGGCUUGUCAGGCUACUUAA   1   **|||||=|||||||*||||||| targets:37   UGCACCGGACAGUCCAAUGAAUU   59 Target Full Sequence	2.5	Sequence 8115 from Patent EP2985353	NA	coding protein	psRNATarget
HI409990.1	ncRNA:23   UGGUGGCUUGUCAGGCUACUUAA   1   **|||||=|||||||*||||||| targets:37   UGCACCGGACAGUCCAAUGAAUU   59 Target Full Sequence	2.5	Sequence 8115 from Patent EP2074227	NA	coding protein	psRNATarget
JB170451.1	ncRNA:23   UGGUGGCUUGUCAGGCUACUUAA   1   **|||||=|||||||*||||||| targets:37   UGCACCGGACAGUCCAAUGAAUU   59 Target Full Sequence	2.5	Sequence 8115 from Patent EP2559767	NA	coding protein	psRNATarget