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BaseInfo

ncRNA ID	novel_zma_miR3245
Species	Zea mays
Class	miRNA
Genome position	Chr8:134766691-134766833 [+]
Reference genome	RefGen_v4
Source	SRR1583944
Length	23
Mature sequence(if miRNA)	1 - AAGGUCUUGUUCGGUUAUUCCCA - 23
Stem-loop(if miRNA)	--A   U            -   C    A  CA       GA          AAAAA   UUAAGAAGUUUGA    AGG CUUGUUCGGUUA UUC CAAU CA  UGGAUUG  UGGGAUUGGA     UUC             C    ||| |||||||||||| ||| |||| ||  |||||||  ||||||||||     |||             U    UCC GAACAAGCCAAU GAG GUUA GU  ACCUAAC  ACCCUAACCU     ACA             U GAA   C            C   A    G  AC       UC          ---AC   AACUUAGGGUUUG
Stem-loop sequence	AAGGUCUUGUUCGGUUAUUCCCAAUACACAUGGAUUGGAUGGGAUUGGAAAAAAUUCUUAAGAAGUUUGACUUGUUUGGGAUUCAAACACAUCCAAUCCCACUCAAUCCACAUGGAUUGAGAGCUAACCGAACAAGCCCUAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT070056.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||||||| targets:867   UGGGAAUAACCGAACAAGACCUU   889 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0374H10 mRNA, complete cds	NA	coding protein	psRNATarget
AY103687.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||||||| targets:1178   UGGGAAUAACCGAACAAGACCUU   1200 Target Full Sequence	0.0	Zea mays PCO106710 mRNA sequence	NA	coding protein	psRNATarget
EZ059008.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||=|||||||| targets:74   UGGGAAUAACCGAAUAAGACCUU   96 Target Full Sequence	1.5	TSA: Zea mays contig60130, mRNA sequence	NA	coding protein	psRNATarget
LQ235216.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||=|||| targets:122   UGGGAAUAACCGAACAAGGCCUU   144 Target Full Sequence	1.5	Sequence 1211 from Patent EP2985353	NA	coding protein	psRNATarget
HI403086.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||=|||| targets:122   UGGGAAUAACCGAACAAGGCCUU   144 Target Full Sequence	1.5	Sequence 1211 from Patent EP2074227	NA	coding protein	psRNATarget
JB163547.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||=|||| targets:122   UGGGAAUAACCGAACAAGGCCUU   144 Target Full Sequence	1.5	Sequence 1211 from Patent EP2559767	NA	coding protein	psRNATarget
AY111036.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||=|||| targets:201   UGGGAAUAACCGAACAAGGCCUU   223 Target Full Sequence	1.5	Zea mays CL1582_4 mRNA sequence	NA	coding protein	psRNATarget
BT086570.2	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||=|||| targets:242   UGGGAAUAACCGAACAAGGCCUU   264 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0184M19 mRNA, complete cds	NA	coding protein	psRNATarget
AY109413.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||=|||| targets:1674   UGGGAAUAACCGAACAAGGCCUU   1696 Target Full Sequence	1.5	Zea mays CL2362_1 mRNA sequence	NA	coding protein	psRNATarget
XM_020551688.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||=|||| targets:2521   UGGGAAUAACCGAACAAGGCCUU   2543 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ074510.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||||||* targets:72   UGGGAAUAACCGAACAAGACCUA   94 Target Full Sequence	1.0	TSA: Zea mays contig10147, mRNA sequence	NA	coding protein	psRNATarget
BT084790.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||||||* targets:1135   UGGGAAUAACCGAACAAGACCUA   1157 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0181D14 mRNA, complete cds	NA	coding protein	psRNATarget
BT066344.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||||||* targets:2974   UGGGAAUAACCGAACAAGACCUA   2996 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0346C18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175804.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||||||* targets:2974   UGGGAAUAACCGAACAAGACCUA   2996 Target Full Sequence	1.0	Zea mays putative ARF GTPase activating domain protein with ankyrin repeat-containing protein (LOC100383138), mRNA	NA	coding protein	psRNATarget
HI403070.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||=|||* targets:115   UGGGAAUAACCGAACAAGGCCUG   137 Target Full Sequence	2.5	Sequence 1195 from Patent EP2074227	NA	coding protein	psRNATarget
JB163531.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||=|||* targets:115   UGGGAAUAACCGAACAAGGCCUG   137 Target Full Sequence	2.5	Sequence 1195 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235200.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||=|||* targets:115   UGGGAAUAACCGAACAAGGCCUG   137 Target Full Sequence	2.5	Sequence 1195 from Patent EP2985353	NA	coding protein	psRNATarget
JB163448.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||=|||* targets:127   UGGGAAUAACCGAACAAGGCCUA   149 Target Full Sequence	2.5	Sequence 1112 from Patent EP2559767	NA	coding protein	psRNATarget
HI403092.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||=|||* targets:127   UGGGAAUAACCGAACAAGGCCUA   149 Target Full Sequence	2.5	Sequence 1217 from Patent EP2074227	NA	coding protein	psRNATarget
JB163553.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||=|||* targets:127   UGGGAAUAACCGAACAAGGCCUA   149 Target Full Sequence	2.5	Sequence 1217 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235117.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||=|||* targets:127   UGGGAAUAACCGAACAAGGCCUA   149 Target Full Sequence	2.5	Sequence 1112 from Patent EP2985353	NA	coding protein	psRNATarget
HI402987.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||=|||* targets:127   UGGGAAUAACCGAACAAGGCCUA   149 Target Full Sequence	2.5	Sequence 1112 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235222.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||=|||* targets:127   UGGGAAUAACCGAACAAGGCCUA   149 Target Full Sequence	2.5	Sequence 1217 from Patent EP2985353	NA	coding protein	psRNATarget
BT018247.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||| targets:486   UGGGAAUAACCGAACAAGCCCUU   508 Target Full Sequence	1.5	Zea mays clone EL01N0563E06.c mRNA sequence	NA	coding protein	psRNATarget
BT062563.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||| targets:1317   UGGGAAUAACCGAACAAGCCCUU   1339 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0314E20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174684.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||| targets:1317   UGGGAAUAACCGAACAAGCCCUU   1339 Target Full Sequence	1.5	Zea mays Elongation factor G-1 mitochondrial (pco134899), mRNA	NA	coding protein	psRNATarget
BT066364.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||| targets:1547   UGGGAAUAACCGAACAAGCCCUU   1569 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0009H06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175812.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||| targets:1547   UGGGAAUAACCGAACAAGCCCUU   1569 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383146 (LOC100383146), mRNA	NA	coding protein	psRNATarget
EU964623.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||| targets:1541   UGGGAAUAACCGAACAAGCCCUU   1563 Target Full Sequence	1.5	Zea mays clone 280415 sorting nexin 1 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539702.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||| targets:2580   UGGGAAUAACCGAACAAGCCCUU   2602 Target Full Sequence	1.5	PREDICTED: Zea mays receptor kinase-like protein Xa21 (LOC103628995), mRNA	NA	coding protein	psRNATarget
XM_008645434.2	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||| targets:2560   UGGGAAUAACCGAACAAGCCCUU   2582 Target Full Sequence	1.5	PREDICTED: Zea mays Elongation factor G-1 mitochondrial (pco134899), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676887.2	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||| targets:2669   UGGGAAUAACCGAACAAGCCCUU   2691 Target Full Sequence	1.5	PREDICTED: Zea mays lectin-like receptor kinase 7 (LOC100281599), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ113619.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*||||||||||||||||=|||| targets:17   UAGGAAUAACCGAACAAGGCCUU   39 Target Full Sequence	1.5	TSA: Zea mays contig49280, mRNA sequence	NA	coding protein	psRNATarget
EU966790.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |||||||||*||||||||=|||| targets:1500   UGGGAAUAAGCGAACAAGGCCUU   1522 Target Full Sequence	2.5	Zea mays clone 297432 pyruvate dehydrogenase E1 component alpha subunit mRNA, complete cds	NA	coding protein	psRNATarget
EU962948.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |||||||||*||||||||=|||| targets:1500   UGGGAAUAAGCGAACAAGGCCUU   1522 Target Full Sequence	2.5	Zea mays clone 246807 pyruvate dehydrogenase E1 component alpha subunit mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156787.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |||||||||*||||||||=|||| targets:1544   UGGGAAUAAGCGAACAAGGCCUU   1566 Target Full Sequence	2.5	Zea mays pyruvate dehydrogenase E1 component alpha subunit (LOC100283889), mRNA	NA	coding protein	psRNATarget
EU966290.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |||||||||*||||||||=|||| targets:1544   UGGGAAUAAGCGAACAAGGCCUU   1566 Target Full Sequence	2.5	Zea mays clone 293206 pyruvate dehydrogenase E1 component alpha subunit mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147267.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |||*||||||||||||||=|||| targets:1567   UGGAAAUAACCGAACAAGGCCUU   1589 Target Full Sequence	1.5	Zea mays UDP-glycosyltransferase 91A1 (gpm263), mRNA	NA	coding protein	psRNATarget
BT039499.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |||*||||||||||||||=|||| targets:1567   UGGAAAUAACCGAACAAGGCCUU   1589 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0016E06 mRNA, complete cds	NA	coding protein	psRNATarget
AY103588.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |||||||||*||||||||=|||| targets:1518   UGGGAAUAAGCGAACAAGGCCUU   1540 Target Full Sequence	2.5	Zea mays PCO114222 mRNA sequence	NA	coding protein	psRNATarget
BT018572.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*||||||||||||||||=|||| targets:1866   UAGGAAUAACCGAACAAGGCCUU   1888 Target Full Sequence	1.5	Zea mays clone EL01N0443D02.d mRNA sequence	NA	coding protein	psRNATarget
EZ076130.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||*|||||||||||||||||||* targets:77   UGAGAAUAACCGAACAAGACCUA   99 Target Full Sequence	1.0	TSA: Zea mays contig11767, mRNA sequence	NA	coding protein	psRNATarget
JB166347.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||* targets:121   UGGGAAUAACCGAACAAGCCCUA   143 Target Full Sequence	2.5	Sequence 4011 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238016.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||* targets:121   UGGGAAUAACCGAACAAGCCCUA   143 Target Full Sequence	2.5	Sequence 4011 from Patent EP2985353	NA	coding protein	psRNATarget
HI405886.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||* targets:121   UGGGAAUAACCGAACAAGCCCUA   143 Target Full Sequence	2.5	Sequence 4011 from Patent EP2074227	NA	coding protein	psRNATarget
EU942632.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||* targets:284   UGGGAAUAACCGAACAAGCCCUA   306 Target Full Sequence	2.5	Zea mays clone 1525411 mRNA sequence	NA	coding protein	psRNATarget
EU968099.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||* targets:251   UGGGAAUAACCGAACAAGCCCUA   273 Target Full Sequence	2.5	Zea mays clone 314232 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU957313.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||* targets:762   UGGGAAUAACCGAACAAGCCCUA   784 Target Full Sequence	2.5	Zea mays clone 1588341 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149687.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||* targets:762   UGGGAAUAACCGAACAAGCCCUA   784 Target Full Sequence	2.5	Zea mays uncharacterized LOC100275644 (LOC100275644), mRNA	NA	coding protein	psRNATarget
NM_001291617.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||* targets:795   UGGGAAUAACCGAACAAGCCCUC   817 Target Full Sequence	2.5	Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA	NA	coding protein	psRNATarget
BT068211.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||* targets:795   UGGGAAUAACCGAACAAGCCCUC   817 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds	NA	coding protein	psRNATarget
EU963259.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||* targets:1038   UGGGAAUAACCGAACAAGCCCUC   1060 Target Full Sequence	2.5	Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds	NA	coding protein	psRNATarget
BT068791.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||* targets:1371   UGGGAAUAACCGAACAAGUCCUA   1393 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0382D13 mRNA, complete cds	NA	coding protein	psRNATarget
EU956028.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   *||||||||||*||||||||||| targets:1568   AGGGAAUAACCAAACAAGACCUU   1590 Target Full Sequence	1.5	Zea mays clone 1555850 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT062929.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   *||||||||||*||||||||||| targets:1657   AGGGAAUAACCAAACAAGACCUU   1679 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0008K15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147345.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   *||||||||||*||||||||||| targets:1758   AGGGAAUAACCAAACAAGACCUU   1780 Target Full Sequence	1.5	Zea mays uncharacterized LOC100272892 (LOC100272892), mRNA	NA	coding protein	psRNATarget
BT039694.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   *||||||||||*||||||||||| targets:1758   AGGGAAUAACCAAACAAGACCUU   1780 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0039F21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669845.2	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||* targets:1824   UGGGAAUAACCGAACAAGCCCUG   1846 Target Full Sequence	2.5	PREDICTED: Zea mays BcpLH protein (cl15365_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU970939.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||* targets:2131   UGGGAAUAACCGAACAAGCCCUA   2153 Target Full Sequence	2.5	Zea mays clone 354307 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, mRNA, complete cds	NA	coding protein	psRNATarget
XM_008651215.2	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*||||||||||||||||||||* targets:483   UAGGAAUAACCGAACAAGACCUG   505 Target Full Sequence	1.0	PREDICTED: Zea mays putative domain of unknown function (DUF641) containing family protein (LOC103630129), mRNA	NA	coding protein	psRNATarget
XM_020543938.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||* targets:314   UGGGAAUAACCGAACAAGCCCUA   336 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020543937.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||* targets:314   UGGGAAUAACCGAACAAGCCCUA   336 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020543936.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||* targets:314   UGGGAAUAACCGAACAAGCCCUA   336 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020543935.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||||||||||||||||||*|||* targets:314   UGGGAAUAACCGAACAAGCCCUA   336 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ107685.1	ncRNA:23   AC--CCUUAUUGGCUUGUUCUGGAA   1   ||--||||||||||||||||=|||* targets:115   UGUAGGAAUAACCGAACAAGGCCUA   139 Target Full Sequence	2.5	TSA: Zea mays contig43343, mRNA sequence	NA	coding protein	psRNATarget
EZ113717.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   *||||*||||||||||||=|||| targets:76   CGGGAUUAACCGAACAAGGCCUU   98 Target Full Sequence	2.5	TSA: Zea mays contig49378, mRNA sequence	NA	coding protein	psRNATarget
BT066004.2	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   *||||*||||||||||||=|||| targets:72   CGGGAUUAACCGAACAAGGCCUU   94 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0144M24 mRNA, complete cds	NA	coding protein	psRNATarget
BT086611.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   *||||*||||||||||||=|||| targets:1169   CGGGAUUAACCGAACAAGGCCUU   1191 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0191G08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196567.2	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   *||||*||||||||||||=|||| targets:1233   CGGGAUUAACCGAACAAGGCCUU   1255 Target Full Sequence	2.5	Zea mays resistance to phytophthora 1 (LOC100501929), mRNA	NA	coding protein	psRNATarget
BT040208.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   *||||*||||||||||||=|||| targets:1393   CGGGAUUAACCGAACAAGGCCUU   1415 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0071O17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539151.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   *||||*||||||||||||=|||| targets:316   CGGGAUUAACCGAACAAGGCCUU   338 Target Full Sequence	2.5	PREDICTED: Zea mays resistance to phytophthora 1 (LOC100501929), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542807.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*||||||||||||||||=|||* targets:2567   UUGGAAUAACCGAACAAGGCCUC   2589 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g66520 (LOC103636848), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542806.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*||||||||||||||||=|||* targets:2567   UUGGAAUAACCGAACAAGGCCUC   2589 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g66520 (LOC103636848), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542805.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*||||||||||||||||=|||* targets:2567   UUGGAAUAACCGAACAAGGCCUC   2589 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g66520 (LOC103636848), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI409644.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*||||||||||||||||*|||| targets:123   UAGGAAUAACCGAACAAGCCCUU   145 Target Full Sequence	1.5	Sequence 7769 from Patent EP2074227	NA	coding protein	psRNATarget
JB170105.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*||||||||||||||||*|||| targets:123   UAGGAAUAACCGAACAAGCCCUU   145 Target Full Sequence	1.5	Sequence 7769 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241774.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*||||||||||||||||*|||| targets:123   UAGGAAUAACCGAACAAGCCCUU   145 Target Full Sequence	1.5	Sequence 7769 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001152524.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*|||||||||||||||*||||| targets:1488   UAGGAAUAACCGAACAAAACCUU   1510 Target Full Sequence	1.5	Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), mRNA	NA	coding protein	psRNATarget
BT063004.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*|||||||||||||||*||||| targets:1488   UAGGAAUAACCGAACAAAACCUU   1510 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0016A10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674543.2	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*||||||||||||||||*|||| targets:2525   UAGGAAUAACCGAACAAGCCCUU   2547 Target Full Sequence	1.5	PREDICTED: Zea mays Peptidase M28 family protein (cl4954_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008658770.2	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*||||||||||||||||*|||| targets:2877   UAGGAAUAACCGAACAAGCCCUU   2899 Target Full Sequence	1.5	PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658769.2	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*||||||||||||||||*|||| targets:2886   UAGGAAUAACCGAACAAGCCCUU   2908 Target Full Sequence	1.5	PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008679798.2	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   ||**||||||||||||||||||| targets:169   UGUAAAUAACCGAACAAGACCUU   191 Target Full Sequence	0.0	PREDICTED: Zea mays receptor-like protein kinase HSL1 (LOC103652818), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539455.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*||||||||||||||||*|||| targets:305   UAGGAAUAACCGAACAAGCCCUU   327 Target Full Sequence	1.5	PREDICTED: Zea mays Putative ARM repeat-containing protein containing family protein (LOC103629927), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669572.2	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   **|||||||||||||||*||||| targets:1344   CAGGAAUAACCGAACAAAACCUU   1366 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT037007.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*|*|||||=||||||||||||| targets:1435   UUGAAAUAAUCGAACAAGACCUU   1457 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0151F19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143004.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*|*|||||=||||||||||||| targets:1435   UUGAAAUAAUCGAACAAGACCUU   1457 Target Full Sequence	1.0	Zea mays Sas10/Utp3/C1D family (pco144488), mRNA	NA	coding protein	psRNATarget
XM_020547644.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*|*||||||||||||||=|||| targets:2635   UAGAAAUAACCGAACAAGGCCUU   2657 Target Full Sequence	1.5	PREDICTED: Zea mays putative ABC1 and kinase-like domain family protein (LOC100279203), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ101889.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*|||||||||||||||||*||* targets:69   UUGGAAUAACCGAACAAGAGCUA   91 Target Full Sequence	2.5	TSA: Zea mays contig37545, mRNA sequence	NA	coding protein	psRNATarget
AY111503.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |***||||||=|||||||||||| targets:186   UUAAAAUAACUGAACAAGACCUU   208 Target Full Sequence	1.5	Zea mays CL14541_1 mRNA sequence	NA	coding protein	psRNATarget
EU960091.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*||||||||||||||||*|||* targets:1192   UAGGAAUAACCGAACAAGCCCUA   1214 Target Full Sequence	2.5	Zea mays clone 221636 mRNA sequence	NA	coding protein	psRNATarget
BT064472.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |||*||||||||||||||*|||* targets:1446   UGGAAAUAACCGAACAAGCCCUA   1468 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT040193.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |||*||||||||||||||*|||* targets:1490   UGGAAAUAACCGAACAAGCCCUA   1512 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
AY105910.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |||*||||||||||||||*|||* targets:1508   UGGAAAUAACCGAACAAGCCCUA   1530 Target Full Sequence	2.5	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |||*||||||||||||||*|||* targets:1522   UGGAAAUAACCGAACAAGCCCUA   1544 Target Full Sequence	2.5	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
BT041454.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |||*||||||||||||||*|||* targets:1522   UGGAAAUAACCGAACAAGCCCUA   1544 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550022.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*||||||||||||||||*|||* targets:3712   UAGGAAUAACCGAACAAGCCCUA   3734 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020550024.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*||||||||||||||||*|||* targets:3736   UAGGAAUAACCGAACAAGCCCUA   3758 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020550021.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*||||||||||||||||*|||* targets:3790   UAGGAAUAACCGAACAAGCCCUA   3812 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020550020.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*||||||||||||||||*|||* targets:3784   UAGGAAUAACCGAACAAGCCCUA   3806 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020550017.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*||||||||||||||||*|||* targets:3792   UAGGAAUAACCGAACAAGCCCUA   3814 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020550019.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*||||||||||||||||*|||* targets:3779   UAGGAAUAACCGAACAAGCCCUA   3801 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020550016.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*||||||||||||||||*|||* targets:3854   UAGGAAUAACCGAACAAGCCCUA   3876 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550018.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*||||||||||||||||*|||* targets:4178   UAGGAAUAACCGAACAAGCCCUA   4200 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020550015.1	ncRNA:23   ACCCUUAUUGGCUUGUUCUGGAA   1   |*||||||||||||||||*|||* targets:4274   UAGGAAUAACCGAACAAGCCCUA   4296 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X1, mRNA	NA	coding protein	psRNATarget