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BaseInfo

ncRNA ID	novel_zma_miR3242
Species	Zea mays
Class	miRNA
Genome position	Chr5:12186094-12186159 [+]
Reference genome	RefGen_v4
Source	SRR2089715;SRR2089705
Length	24
Mature sequence(if miRNA)	1 - GUUUCGUUUUAGAUGUCGCUGGAU - 24
Stem-loop(if miRNA)	--     G      A              G AG   GUUUC UUUUAG UGUCGCUGGAUAGU C  A   ||||| |||||| |||||||||||||| |   CAAAG AAAAUC ACAGCGACCUAUCA G  A GA     A      A              A UU
Stem-loop sequence	GUUUCGUUUUAGAUGUCGCUGGAUAGUGCAGAAUUGAACUAUCCAGCGACAACUAAAAAGAAACAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163549.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:43   AUCCAGCGACAACUAAAACGAAAC   66 Target Full Sequence	1.5	Sequence 1213 from Patent EP2559767	NA	coding protein	psRNATarget
HI403088.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:43   AUCCAGCGACAACUAAAACGAAAC   66 Target Full Sequence	1.5	Sequence 1213 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235218.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:43   AUCCAGCGACAACUAAAACGAAAC   66 Target Full Sequence	1.5	Sequence 1213 from Patent EP2985353	NA	coding protein	psRNATarget
LQ240728.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:55   AUCCAGCGACAACUAAAACGAAAC   78 Target Full Sequence	1.5	Sequence 6723 from Patent EP2985353	NA	coding protein	psRNATarget
JB169059.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:55   AUCCAGCGACAACUAAAACGAAAC   78 Target Full Sequence	1.5	Sequence 6723 from Patent EP2559767	NA	coding protein	psRNATarget
HI408598.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:55   AUCCAGCGACAACUAAAACGAAAC   78 Target Full Sequence	1.5	Sequence 6723 from Patent EP2074227	NA	coding protein	psRNATarget
EZ112557.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:98   AUCCAGCGACAACUAAAACGAAAC   121 Target Full Sequence	1.5	TSA: Zea mays contig48218, mRNA sequence	NA	coding protein	psRNATarget
EU952378.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:763   AUCCAGCGACAACUAAAACGAAAC   786 Target Full Sequence	1.5	Zea mays clone 1278936 mitochondrial import inner membrane translocase subunit TIM14 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU944684.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:751   AUCCAGCGACAACUAAAACGAAAC   774 Target Full Sequence	1.5	Zea mays clone 226132 mRNA sequence	NA	coding protein	psRNATarget
BT065083.2	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:256   AUCCAGCGACAACUAAAACGAAAC   279 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0081B22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020541158.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:1077   AUCCAGCGACAACUAAAACGAAAC   1100 Target Full Sequence	1.5	PREDICTED: Zea mays acid phosphatase 1 (LOC103633566), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020541157.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:1079   AUCCAGCGACAACUAAAACGAAAC   1102 Target Full Sequence	1.5	PREDICTED: Zea mays acid phosphatase 1 (LOC103633566), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655254.2	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:1098   AUCCAGCGACAACUAAAACGAAAC   1121 Target Full Sequence	1.5	PREDICTED: Zea mays acid phosphatase 1 (LOC103633566), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008677351.2	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:2107   AUCCAGCGACAACUAAAACGAAAC   2130 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103651662), mRNA	NA	coding protein	psRNATarget
XM_020537567.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:1502   AUCCAGCGACAACUAAAACGAAAC   1525 Target Full Sequence	1.5	PREDICTED: Zea mays MADS2 (zmm2), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008669143.2	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:2791   AUCCAGCGACAACUAAAACGAAAC   2814 Target Full Sequence	1.5	PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008669142.2	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:2721   AUCCAGCGACAACUAAAACGAAAC   2744 Target Full Sequence	1.5	PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008669138.2	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:2853   AUCCAGCGACAACUAAAACGAAAC   2876 Target Full Sequence	1.5	PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546695.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:2269   AUCCAGCGACAACUAAAACGAAAC   2292 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X13, mRNA	NA	coding protein	psRNATarget
XM_008666445.2	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:2269   AUCCAGCGACAACUAAAACGAAAC   2292 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X14, mRNA	NA	coding protein	psRNATarget
XM_020546694.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:2269   AUCCAGCGACAACUAAAACGAAAC   2292 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_020546685.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:2290   AUCCAGCGACAACUAAAACGAAAC   2313 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546687.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:2290   AUCCAGCGACAACUAAAACGAAAC   2313 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020546686.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:2290   AUCCAGCGACAACUAAAACGAAAC   2313 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020546691.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:2269   AUCCAGCGACAACUAAAACGAAAC   2292 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020546689.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:2228   AUCCAGCGACAACUAAAACGAAAC   2251 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020546683.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:2283   AUCCAGCGACAACUAAAACGAAAC   2306 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546684.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:2308   AUCCAGCGACAACUAAAACGAAAC   2331 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547479.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:3231   AUCCAGCGACAACUAAAACGAAAC   3254 Target Full Sequence	1.5	PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547478.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:3231   AUCCAGCGACAACUAAAACGAAAC   3254 Target Full Sequence	1.5	PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546692.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:2269   AUCCAGCGACAACUAAAACGAAAC   2292 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020546693.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||| targets:2207   AUCCAGCGACAACUAAAACGAAAC   2230 Target Full Sequence	1.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X11, mRNA	NA	coding protein	psRNATarget
HI407229.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   ||=||||||||*|||||||||||| targets:55   AUUCAGCGACAACUAAAACGAAAC   78 Target Full Sequence	1.5	Sequence 5354 from Patent EP2074227	NA	coding protein	psRNATarget
JB167690.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   ||=||||||||*|||||||||||| targets:55   AUUCAGCGACAACUAAAACGAAAC   78 Target Full Sequence	1.5	Sequence 5354 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239359.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   ||=||||||||*|||||||||||| targets:55   AUUCAGCGACAACUAAAACGAAAC   78 Target Full Sequence	1.5	Sequence 5354 from Patent EP2985353	NA	coding protein	psRNATarget
JB167731.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   ||=||||||||*|||||||||||| targets:56   AUUCAGCGACAACUAAAACGAAAC   79 Target Full Sequence	1.5	Sequence 5395 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239400.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   ||=||||||||*|||||||||||| targets:56   AUUCAGCGACAACUAAAACGAAAC   79 Target Full Sequence	1.5	Sequence 5395 from Patent EP2985353	NA	coding protein	psRNATarget
HI407270.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   ||=||||||||*|||||||||||| targets:56   AUUCAGCGACAACUAAAACGAAAC   79 Target Full Sequence	1.5	Sequence 5395 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239435.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   ||=|||||||||||||||*||||| targets:56   AUUCAGCGACAUCUAAAAAGAAAC   79 Target Full Sequence	1.5	Sequence 5430 from Patent EP2985353	NA	coding protein	psRNATarget
HI407305.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   ||=|||||||||||||||*||||| targets:56   AUUCAGCGACAUCUAAAAAGAAAC   79 Target Full Sequence	1.5	Sequence 5430 from Patent EP2074227	NA	coding protein	psRNATarget
JB167766.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   ||=|||||||||||||||*||||| targets:56   AUUCAGCGACAUCUAAAAAGAAAC   79 Target Full Sequence	1.5	Sequence 5430 from Patent EP2559767	NA	coding protein	psRNATarget
EU968044.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   ||=|||||||||||||||*||||| targets:1074   AUUCAGCGACAUCUAAAAAGAAAC   1097 Target Full Sequence	1.5	Zea mays clone 313382 adenylyl-sulfate kinase 1 mRNA, complete cds	NA	coding protein	psRNATarget
BT035546.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   ||=|||||||||||||||*||||| targets:962   AUUCAGCGACAUCUAAAAAGAAAC   985 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0068P01 mRNA, complete cds	NA	coding protein	psRNATarget
BT036723.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||||||||*|||||||||||* targets:746   AUCCAGCGACAACUAAAACGAAAA   769 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0133L19 mRNA, complete cds	NA	coding protein	psRNATarget
HI405858.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   ||==|||||||*|||||||||||| targets:58   AUUUAGCGACAACUAAAACGAAAC   81 Target Full Sequence	1.5	Sequence 3983 from Patent EP2074227	NA	coding protein	psRNATarget
JB166319.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   ||==|||||||*|||||||||||| targets:58   AUUUAGCGACAACUAAAACGAAAC   81 Target Full Sequence	1.5	Sequence 3983 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237988.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   ||==|||||||*|||||||||||| targets:58   AUUUAGCGACAACUAAAACGAAAC   81 Target Full Sequence	1.5	Sequence 3983 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001305845.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   ||==|||||||*|||||||||||| targets:2270   AUUUAGCGACAACUAAAACGAAAC   2293 Target Full Sequence	1.5	Zea mays uncharacterized LOC542022 (LOC542022), mRNA	NA	coding protein	psRNATarget
HI406784.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||*|||||*|||||||||||| targets:44   AUCCAACGACAACUAAAACGAAAC   67 Target Full Sequence	2.5	Sequence 4909 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238914.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||*|||||*|||||||||||| targets:44   AUCCAACGACAACUAAAACGAAAC   67 Target Full Sequence	2.5	Sequence 4909 from Patent EP2985353	NA	coding protein	psRNATarget
JB167245.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   |||||*|||||*|||||||||||| targets:44   AUCCAACGACAACUAAAACGAAAC   67 Target Full Sequence	2.5	Sequence 4909 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239449.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   ***|=||||||*|||||||||||| targets:221   UAGCGGCGACAACUAAAACGAAAC   244 Target Full Sequence	1.5	Sequence 5444 from Patent EP2985353	NA	coding protein	psRNATarget
JB167780.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   ***|=||||||*|||||||||||| targets:221   UAGCGGCGACAACUAAAACGAAAC   244 Target Full Sequence	1.5	Sequence 5444 from Patent EP2559767	NA	coding protein	psRNATarget
HI407319.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   ***|=||||||*|||||||||||| targets:221   UAGCGGCGACAACUAAAACGAAAC   244 Target Full Sequence	1.5	Sequence 5444 from Patent EP2074227	NA	coding protein	psRNATarget
BT066708.1	ncRNA:24   UAGGUCGCUGUAGAUUUUGCUUUG   1   ***|=||||||*|||||||||||| targets:149   UAGCGGCGACAACUAAAACGAAAC   172 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0054D21 mRNA, complete cds	NA	coding protein	psRNATarget