Search result

BaseInfo

ncRNA ID osa-miR5157b-3p
Species Oryza sativa
Class miRNA
Genome position Chr8:21489165-21489257 [-]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 13 - AGAAGUUGUGGCUAUCAAAAAGUU - 36
Stem-loop(if miRNA) ----      A         A                        UC
    GCCUUA GAACUUUUU AUAGCUACAACUUCUCUCUUAGAA  A
    |||||| ||||||||| ||||||||||||||||||||||||  A
    CGGAGU CUUGAAAAA UAUCGGUGUUGAAGAGAGAAUCUU  C
AUCC      C         C                        CU
Stem-loop sequence GCCUUAAGAACUUUUUAAUAGCUACAACUUCUCUCUUAGAAUCAACUCUUCUAAGAGAGAAGUUGUGGCUAUCAAAAAGUUCCUGAGGCCCUA

Reference

1 PMID:21525786
"Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus";
Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D;
RNA Biol. 8:538-547(2011).