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BaseInfo

ncRNA ID novel_zma_miR3239
Species Zea mays
Class miRNA
Genome position Chr10:68482338-68482453 [+]
Reference genome RefGen_v4
Source SRR2089715
Length 20
Mature sequence(if miRNA) 1 - UUUGCCAAGUGUCAGACGUU - 20
Stem-loop(if miRNA) --      A        ACGUU      C A    U UC       C        ACC
  UUUGCC AGUGUCAG     GGCACU G CAAA U  UUUUUUG CGAGUGUU   U
  |||||| ||||||||     |||||| | |||| |  ||||||| ||||||||
  AAACGG UCACAGUU     CUGUGA C GUUU A  AAAAAAU GCUCACAA   G
UG      C        CCUUU      A C    U UA       A        ACA
Stem-loop sequence UUUGCCAAGUGUCAGACGUUGGCACUCGACAAAUUUCUUUUUUGCCGAGUGUUACCUGACAAACACUCGAUAAAAAAAUAUUUUGCCAAGUGUCUUUCCUUGACACUCGGCAAAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT063684.1
ncRNA:20   UUGCAGACUGUGAACCGUUU   1
  ||||*||||||||*||||||
targets:1266   AACGACUGACACUCGGCAAA   1285

2.5 Zea mays full-length cDNA clone ZM_BFc0094N19 mRNA, complete cds NA coding protein psRNATarget
NM_001175015.1
ncRNA:20   UUGCAGACUGUGAACCGUUU   1
  ||||*||||||||*||||||
targets:1266   AACGACUGACACUCGGCAAA   1285

2.5 Zea mays uncharacterized LOC100382263 (LOC100382263), mRNA NA coding protein psRNATarget