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BaseInfo

ncRNA ID	novel_zma_miR3236
Species	Zea mays
Class	miRNA
Genome position	Chr4:49625376-49625466 [+]
Reference genome	RefGen_v4
Source	SRR2089715;SRR4237224;SRR4237226;SRR4237227;SRR5105963;SRR2089701
Length	19
Mature sequence(if miRNA)	73 - GGCAGUCUCCUUGGCUAGC - 91
Stem-loop(if miRNA)	--          U    U       UC  UUGUU        A   GA   UAGCCAAGGA GACU GCCUAUG  CU     UACAAAGG UCA  A   |||||||||| |||| |||||||  ||     |||||||| |||   AUCGGUUCCU CUGA CGGAUGC  GG     GUGUUUCC GGU  U CG          -    -       UU  ---UU        A   GU
Stem-loop sequence	UAGCCAAGGAUGACUUGCCUAUGUCCUUUGUUUACAAAGGAUCAGAAUUGUGGACCUUUGUGUUGGUUCGUAGGCAGUCUCCUUGGCUAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT062831.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   ||||||||||||||||||| targets:234   GCUAGCCAAGGAGACUGCC   252 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0354L14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176546.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   ||||||||||||||||||| targets:862   GCUAGCCAAGGAGACUGCC   880 Target Full Sequence	0.0	Zea mays uncharacterized LOC100383927 (LOC100383927), mRNA	NA	coding protein	psRNATarget
BT068645.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   ||||||||||||||||||| targets:862   GCUAGCCAAGGAGACUGCC   880 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0360A11 mRNA, complete cds	NA	coding protein	psRNATarget
BT054579.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   *|||||||||||||||||| targets:452   ACUAGCCAAGGAGACUGCC   470 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0162O11 mRNA, complete cds	NA	coding protein	psRNATarget
BT054579.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   *||||||||||||=||||| targets:297   ACUAGCCAAGGAGGCUGCC   315 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0162O11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152615.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   *|||||||||||||||||| targets:452   ACUAGCCAAGGAGACUGCC   470 Target Full Sequence	1.0	Zea mays uncharacterized LOC100279619 (LOC100279619), mRNA	NA	coding protein	psRNATarget
NM_001152615.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   *||||||||||||=||||| targets:297   ACUAGCCAAGGAGGCUGCC   315 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279619 (LOC100279619), mRNA	NA	coding protein	psRNATarget
LQ237933.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   *||||||||||||=||||| targets:8   ACUAGCCAAGGAGGCUGCC   26 Target Full Sequence	2.5	Sequence 3928 from Patent EP2985353	NA	coding protein	psRNATarget
JB166264.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   *||||||||||||=||||| targets:8   ACUAGCCAAGGAGGCUGCC   26 Target Full Sequence	2.5	Sequence 3928 from Patent EP2559767	NA	coding protein	psRNATarget
HI405803.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   *||||||||||||=||||| targets:8   ACUAGCCAAGGAGGCUGCC   26 Target Full Sequence	2.5	Sequence 3928 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020545766.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   |*||||||||||||*|||| targets:2537   GGUAGCCAAGGAGAGUGCC   2555 Target Full Sequence	2.5	PREDICTED: Zea mays probable calcium-transporting ATPase 4, plasma membrane-type (LOC103640660), mRNA	NA	coding protein	psRNATarget