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BaseInfo

ncRNA ID novel_zma_miR3234
Species Zea mays
Class miRNA
Genome position Chr10:139203180-139203322 [+]
Reference genome RefGen_v4
Source SRR2089715;SRR2089700
Length 24
Mature sequence(if miRNA) 1 - AGGGGCUUGUUCGGUUAUUUUCAA - 24
Stem-loop(if miRNA) --A               -AU UU                 A         UAUGGAUUG  A   A   UG -   G
   GGGGCUUGUUCGGUU   U  CAAUCCAUAUGGAUUGA GGGGAUUGA         GG GGG UUU  A CUU C
   |||||||||||||||   |  ||||||||||||||||| |||||||||         || ||| |||  | |||
   UCCCGAACAAGCCAA   G  GUUAGGUAUACCUAACU CCCCUAACU         CC CCC AAA  U GGG U
GGA               GAC GG                 C         ---------  -   -   GU A   A
Stem-loop sequence AGGGGCUUGUUCGGUUAUUUUCAAUCCAUAUGGAUUGAAGGGGAUUGAUAUGGAUUGGGAGGGAUUUUGACUUGCUAGGGAUUGAAACCCCCUCAAUCCCCCUCAAUCCAUAUGGAUUGGGGCAGAACCGAACAAGCCCUAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001348011.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||||||||||||||||||||||=|
targets:469   UUGAAAAUAACCGAACAAGCCCUU   492

1.5 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
EU972046.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||||||||||||||||||||||=|
targets:808   UUGAAAAUAACCGAACAAGCCCUU   831

1.5 Zea mays clone 373861 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT055069.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||||||||||||||||||||||=|
targets:1000   UUGAAAAUAACCGAACAAGCCCUU   1023

1.5 Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds NA coding protein psRNATarget
XM_008654469.2
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||||||||||||||||||||||=|
targets:3144   UUGAAAAUAACCGAACAAGCCCUU   3167

1.5 PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA NA coding protein psRNATarget
EZ092886.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||||||||||||||||||||||=*
targets:92   UUGAAAAUAACCGAACAAGCCCUA   115

2.5 TSA: Zea mays contig28535, mRNA sequence NA coding protein psRNATarget
BT064935.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||||||||||||||||||||||=*
targets:860   UUGAAAAUAACCGAACAAGCCCUC   883

2.5 Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds NA coding protein psRNATarget
BT062922.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||||||||||||||||||||||=*
targets:922   UUGAAAAUAACCGAACAAGCCCUG   945

2.5 Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds NA coding protein psRNATarget
EU959055.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||||||||||||||||||||||=*
targets:870   UUGAAAAUAACCGAACAAGCCCUG   893

2.5 Zea mays clone 209821 mRNA sequence NA coding protein psRNATarget
EU959258.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||||||||||||||||||||||=*
targets:868   UUGAAAAUAACCGAACAAGCCCUG   891

2.5 Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959053.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||||||||||||||||||||||=*
targets:868   UUGAAAAUAACCGAACAAGCCCUG   891

2.5 Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959345.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||||||||||||||||||||||=*
targets:869   UUGAAAAUAACCGAACAAGCCCUG   892

2.5 Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
NM_001156482.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||||||||||||||||||||||=*
targets:912   UUGAAAAUAACCGAACAAGCCCUC   935

2.5 Zea mays threonine endopeptidase (LOC100283581), mRNA NA coding protein psRNATarget
EU965203.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||||||||||||||||||||||=*
targets:912   UUGAAAAUAACCGAACAAGCCCUC   935

2.5 Zea mays clone 284456 threonine endopeptidase mRNA, complete cds NA coding protein psRNATarget
XM_008666525.2
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||||||||||||||||||||||=*
targets:941   UUGAAAAUAACCGAACAAGCCCUG   964

2.5 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA NA coding protein psRNATarget
XM_020548080.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||||||||||||||||||||||=*
targets:1071   UUGAAAAUAACCGAACAAGCCCUA   1094

2.5 PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA NA coding protein psRNATarget
XM_020548080.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||||||||||||||||||||||=*
targets:1184   UUGAAAAUAACCGAACAAGCCCUA   1207

2.5 PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA NA coding protein psRNATarget
BT055467.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||||||||||||||||||||||=*
targets:1109   UUGAAAAUAACCGAACAAGCCCUA   1132

2.5 Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds NA coding protein psRNATarget
BT055467.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||||||||||||||||||||||=*
targets:1222   UUGAAAAUAACCGAACAAGCCCUA   1245

2.5 Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds NA coding protein psRNATarget
XM_020545207.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||||||||||||||||||||||=*
targets:46   UUGAAAAUAACCGAACAAGCCCUA   69

2.5 PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA NA coding protein psRNATarget
XM_008658331.2
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||||||||||||||||||||||=*
targets:1722   UUGAAAAUAACCGAACAAGCCCUG   1745

2.5 PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA NA coding protein psRNATarget
XM_008673290.2
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||||||||||||||||||||||=*
targets:2004   UUGAAAAUAACCGAACAAGCCCUA   2027

2.5 PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA NA coding protein psRNATarget
XM_020548987.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||||||||||||||||||||||=*
targets:2004   UUGAAAAUAACCGAACAAGCCCUA   2027

2.5 PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA NA coding protein psRNATarget
BT018247.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||==|||||||||||||||||=|
targets:485   UUGGGAAUAACCGAACAAGCCCUU   508

1.5 Zea mays clone EL01N0563E06.c mRNA sequence NA coding protein psRNATarget
BT062563.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||==|||||||||||||||||=|
targets:1316   UUGGGAAUAACCGAACAAGCCCUU   1339

1.5 Zea mays full-length cDNA clone ZM_BFb0314E20 mRNA, complete cds NA coding protein psRNATarget
NM_001174684.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||==|||||||||||||||||=|
targets:1316   UUGGGAAUAACCGAACAAGCCCUU   1339

1.5 Zea mays Elongation factor G-1 mitochondrial (pco134899), mRNA NA coding protein psRNATarget
NM_001175812.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||==|||||||||||||||||=|
targets:1546   UUGGGAAUAACCGAACAAGCCCUU   1569

1.5 Zea mays uncharacterized LOC100383146 (LOC100383146), mRNA NA coding protein psRNATarget
BT066364.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||==|||||||||||||||||=|
targets:1546   UUGGGAAUAACCGAACAAGCCCUU   1569

1.5 Zea mays full-length cDNA clone ZM_BFc0009H06 mRNA, complete cds NA coding protein psRNATarget
EU964623.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||==|||||||||||||||||=|
targets:1540   UUGGGAAUAACCGAACAAGCCCUU   1563

1.5 Zea mays clone 280415 sorting nexin 1 mRNA, complete cds NA coding protein psRNATarget
XM_020539702.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||==|||||||||||||||||=|
targets:2579   UUGGGAAUAACCGAACAAGCCCUU   2602

1.5 PREDICTED: Zea mays receptor kinase-like protein Xa21 (LOC103628995), mRNA NA coding protein psRNATarget
XM_008645434.2
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||==|||||||||||||||||=|
targets:2559   UUGGGAAUAACCGAACAAGCCCUU   2582

1.5 PREDICTED: Zea mays Elongation factor G-1 mitochondrial (pco134899), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008676887.2
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||==|||||||||||||||||=|
targets:2668   UUGGGAAUAACCGAACAAGCCCUU   2691

1.5 PREDICTED: Zea mays lectin-like receptor kinase 7 (LOC100281599), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008658561.2
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||||||||||||||||||||||**
targets:325   UUGAAAAUAACCGAACAAGCCCGA   348

2.5 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA NA coding protein psRNATarget
BT064472.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||=||||||||||||||||||=*
targets:1445   UUGGAAAUAACCGAACAAGCCCUA   1468

2.5 Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds NA coding protein psRNATarget
BT040193.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||=||||||||||||||||||=*
targets:1489   UUGGAAAUAACCGAACAAGCCCUA   1512

2.5 Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds NA coding protein psRNATarget
AY105910.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||=||||||||||||||||||=*
targets:1507   UUGGAAAUAACCGAACAAGCCCUA   1530

2.5 Zea mays PCO106969 mRNA sequence NA coding protein psRNATarget
NM_001148011.2
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||=||||||||||||||||||=*
targets:1521   UUGGAAAUAACCGAACAAGCCCUA   1544

2.5 Zea mays uncharacterized LOC100273594 (AY105910), mRNA NA coding protein psRNATarget
BT041454.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||=||||||||||||||||||=*
targets:1521   UUGGAAAUAACCGAACAAGCCCUA   1544

2.5 Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds NA coding protein psRNATarget
LQ238016.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||==|||||||||||||||||=*
targets:120   UUGGGAAUAACCGAACAAGCCCUA   143

2.5 Sequence 4011 from Patent EP2985353 NA coding protein psRNATarget
JB166347.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||==|||||||||||||||||=*
targets:120   UUGGGAAUAACCGAACAAGCCCUA   143

2.5 Sequence 4011 from Patent EP2559767 NA coding protein psRNATarget
HI405886.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||==|||||||||||||||||=*
targets:120   UUGGGAAUAACCGAACAAGCCCUA   143

2.5 Sequence 4011 from Patent EP2074227 NA coding protein psRNATarget
EU942632.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||==|||||||||||||||||=*
targets:283   UUGGGAAUAACCGAACAAGCCCUA   306

2.5 Zea mays clone 1525411 mRNA sequence NA coding protein psRNATarget
EU968099.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||==|||||||||||||||||=*
targets:250   UUGGGAAUAACCGAACAAGCCCUA   273

2.5 Zea mays clone 314232 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149687.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||==|||||||||||||||||=*
targets:761   UUGGGAAUAACCGAACAAGCCCUA   784

2.5 Zea mays uncharacterized LOC100275644 (LOC100275644), mRNA NA coding protein psRNATarget
EU957313.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||==|||||||||||||||||=*
targets:761   UUGGGAAUAACCGAACAAGCCCUA   784

2.5 Zea mays clone 1588341 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001291617.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||==|||||||||||||||||=*
targets:794   UUGGGAAUAACCGAACAAGCCCUC   817

2.5 Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA NA coding protein psRNATarget
BT068211.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||==|||||||||||||||||=*
targets:794   UUGGGAAUAACCGAACAAGCCCUC   817

2.5 Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds NA coding protein psRNATarget
EU963259.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||==|||||||||||||||||=*
targets:1037   UUGGGAAUAACCGAACAAGCCCUC   1060

2.5 Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds NA coding protein psRNATarget
XM_008669845.2
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||==|||||||||||||||||=*
targets:1823   UUGGGAAUAACCGAACAAGCCCUG   1846

2.5 PREDICTED: Zea mays BcpLH protein (cl15365_1), transcript variant X1, mRNA NA coding protein psRNATarget
EU970939.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||==|||||||||||||||||=*
targets:2130   UUGGGAAUAACCGAACAAGCCCUA   2153

2.5 Zea mays clone 354307 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, mRNA, complete cds NA coding protein psRNATarget
XM_020543938.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||==|||||||||||||||||=*
targets:313   UUGGGAAUAACCGAACAAGCCCUA   336

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020543937.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||==|||||||||||||||||=*
targets:313   UUGGGAAUAACCGAACAAGCCCUA   336

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020543936.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||==|||||||||||||||||=*
targets:313   UUGGGAAUAACCGAACAAGCCCUA   336

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020543935.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  |||==|||||||||||||||||=*
targets:313   UUGGGAAUAACCGAACAAGCCCUA   336

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X2, mRNA NA coding protein psRNATarget
EU956568.1
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||*|||||||||||||||||||=*
targets:1654   UUAAAAAUAACCGAACAAGCCCUG   1677

2.5 Zea mays clone 1566799 mRNA sequence NA coding protein psRNATarget
XM_008658770.2
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||*==|||||||||||||||||=|
targets:2876   UUAGGAAUAACCGAACAAGCCCUU   2899

1.5 PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658769.2
ncRNA:24   AACUUUUAUUGGCUUGUUCGGGGA   1
  ||*==|||||||||||||||||=|
targets:2885   UUAGGAAUAACCGAACAAGCCCUU   2908

1.5 PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X1, mRNA NA coding protein psRNATarget
EZ062569.1
ncRNA:22   CUUUUAUUGGCUUGUUCGGGGA   1
  |=||||||||||||||||||=*
targets:1   GGAAAUAACCGAACAAGCCCUC   22

2.5 TSA: Zea mays contig63691, mRNA sequence NA coding protein psRNATarget
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