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BaseInfo

ncRNA ID	ath-miRf10040-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	25
Mature sequence(if miRNA)	NA - AUACUCGACCAGGGGGUCGAGUGGU - NA
Stem-loop(if miRNA)	-        AGG          A  U   CGA  G   C    GG GG         A AGAC ACUCGACC   UGGUCGAGUG AG GAU   AU ACU UCGU  U  UACUCGGCC G |||| ||||||||   |||||||||| || |||   || ||| ||||  |  ||||||||| UCUG UGAGCUGG   ACCAGCUCAU UC CUG   UG UGA AGCG  G  GUGAGCUGG A     G        GGG          A  -   AAG  G   -    GA UA         G
Stem-loop sequence	AGACACUCGACCAGGUGGUCGAGUGAAGUGAUCGAAUGACUCUCGUGGUGGUACUCGGCCAGAGGGUCGAGUGAUGAGGCGAAGUGGUGAAGUCCUAUACUCGACCAGGGGGUCGAGUGGUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT014714.1	ncRNA:25   UGGUGAGCUGGGGGACCAGCUCAUA   1   =|||||||||||||||||||||||| targets:229   GCCACUCGACCCCCUGGUCGAGUAU   253 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:25   UGGUGAGCUGGGGGACCAGCUCAUA   1   *|=|||||||||||||||||||||| targets:180   UCUACUCGACCCCCUGGUCGAGUAU   204 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:25   UGGUGAGCUGGGGGACCAGCUCAUA   1   =|||||||||||||||||||||||| targets:229   GCCACUCGACCCCCUGGUCGAGUAU   253 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:25   UGGUGAGCUGGGGGACCAGCUCAUA   1   *|=|||||||||||||||||||||| targets:180   UCUACUCGACCCCCUGGUCGAGUAU   204 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:25   UGG--UGAGCUGGGGGACCAGCUCAUA   1   |||--|||||||||||||||||||||| targets:305   ACCUUACUCGACCCCCUGGUCGAGUAU   331 Target Full Sequence	0.0	Arabidopsis thaliana	NA	coding protein	psRNATarget
AY231407.1	ncRNA:25   UGGUGAGCUGGGGGACCAGCUCAUA   1   |==||*||||||||||||||||||| targets:582   AUUACYCGACCCCCUGGUCGAGUAU   606 Target Full Sequence	0.0	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
BT014714.1	ncRNA:25   UGGUGAGCUGGGGGACCAGCUCAUA   1   ===||||*||||||||||||||||| targets:300   GUUACUCAACCCCCUGGUCGAGUAU   324 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:25   UGGUGAGCUGGGGGACCAGCUCAUA   1   ===||||*||||||||||||||||| targets:300   GUUACUCAACCCCCUGGUCGAGUAU   324 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:25   UGGUGAGCUGGGGGACCAGCUCAUA   1   ||||||||||||||||||||||||* targets:89   ACCACUCGACCCCCUGGUCGAGUAG   113 Target Full Sequence	1.0	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:25   UGGUGAGCUGGGGGACCAGCUCAUA   1   ||||||||||||||||||||||||* targets:123   ACCACUCGACCCCCUGGUCGAGUAG   147 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:25   UGGUGAGCUGGGGGACCAGCUCAUA   1   ||||||||||||||||||||||||* targets:498   ACCACUCGACCCCCUGGUCGAGUAG   522 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:25   UGGUGAGCUGGGGGACCAGCUCAUA   1   ||||||||||||||||||||||||* targets:498   ACCACUCGACCCCCUGGUCGAGUAG   522 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:25   UGGUGAGCUGGGGGACCAGCUCAUA   1   |=||||||||||||||||||||||* targets:1570   AUCACUCGACCCCCUGGUCGAGUAG   1594 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:25   UGGUGAGCUGGGGGACCAGCUCAUA   1   |=|||||||||*|||*||||||||| targets:262   AUCACUCGACCACCUUGUCGAGUAU   286 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:25   UGGUGAGCUGGGGGACCAGCUCAUA   1   |=|||||||||*|||*||||||||| targets:637   AUCACUCGACCACCUUGUCGAGUAU   661 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:25   UGGUGAGCUGGGGGACCAGCUCAUA   1   |=|||||||||*|||*||||||||| targets:637   AUCACUCGACCACCUUGUCGAGUAU   661 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:25   UGGUGAGCUGGGGGACCAGCUCAUA   1   *|=|||||||||||*|||||||||* targets:186   UCUACUCGACCCCCAGGUCGAGUAA   210 Target Full Sequence	2.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
AY231407.1	ncRNA:25   UGGUGAGCUGGGGGACCAGCUCAUA   1   |||||||||||||*||||||||||* targets:488   ACCACUCGACCCCGUGGUCGAGUAG   512 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
AY231407.1	ncRNA:25   UGGUGAGCUGGGGGACCAGCUCAUA   1   |||||||||||||*||||||||||* targets:534   ACCACUCGACCCCAUGGUCGAGUAC   558 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:25   UGGUGAGCUGGGGGACCAGCUCAUA   1   ||||||||||||||*|||||||||* targets:1103   ACCACUCGACCCCCAGGUCGAGUAG   1127 Target Full Sequence	2.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget