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BaseInfo

ncRNA ID	novel_zma_miR3228
Species	Zea mays
Class	miRNA
Genome position	Chr4:132886636-132886717 [-]
Reference genome	RefGen_v4
Source	SRR2089715;SRR2089704
Length	21
Mature sequence(if miRNA)	62 - GAAGGGGAUUGGAGGGGCUAA - 82
Stem-loop(if miRNA)	GA       ---   AG             C          A   AGGGGAU   UGG  GGGCUAAAAUUCC UUGUUAUUUA A   |||||||   |||  ||||||||||||| ||||||||||   UCCUCUA   ACC  CCCGGUUUUAGGG AACGAUGAGU A -C       CUA   CU             A          U
Stem-loop sequence	GAAGGGGAUUGGAGGGGCUAAAAUUCCCUUGUUAUUUAAAAUUGAGUAGCAAAGGGAUUUUGGCCCUCCCAAUCAUCUCCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU974541.1	ncRNA:21   AAUCGGGGAGGUUAGGGGAAG   1   |||||||||=||||||||||* targets:1478   UUAGCCCCUUCAAUCCCCUUG   1498 Target Full Sequence	2.5	Zea mays clone 452157 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137538.2	ncRNA:21   AAUCGGGGAGGUUAGGGGAAG   1   |||||||||=||||||||||* targets:1577   UUAGCCCCUUCAAUCCCCUUG   1597 Target Full Sequence	2.5	Zea mays Ycf20-like protein (LOC100192115), mRNA	NA	coding protein	psRNATarget
XM_008682827.2	ncRNA:21   AAUCGGGGAGGUUAGGGGAAG   1   |||||||||=||||||||||* targets:1524   UUAGCCCCUUCAAUCCCCUUG   1544 Target Full Sequence	2.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008682826.2	ncRNA:21   AAUCGGGGAGGUUAGGGGAAG   1   |||||||||=||||||||||* targets:1617   UUAGCCCCUUCAAUCCCCUUG   1637 Target Full Sequence	2.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU957690.1	ncRNA:21   AAUCGGGGAGGUUAGGGGAAG   1   |||||||||=||||||||||* targets:1650   UUAGCCCCUUCAAUCCCCUUG   1670 Target Full Sequence	2.5	Zea mays clone 1610264 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682824.2	ncRNA:21   AAUCGGGGAGGUUAGGGGAAG   1   |||||||||=||||||||||* targets:1670   UUAGCCCCUUCAAUCCCCUUG   1690 Target Full Sequence	2.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008682823.2	ncRNA:21   AAUCGGGGAGGUUAGGGGAAG   1   |||||||||=||||||||||* targets:1716   UUAGCCCCUUCAAUCCCCUUG   1736 Target Full Sequence	2.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008682825.2	ncRNA:21   AAUCGGGGAGGUUAGGGGAAG   1   |||||||||=||||||||||* targets:1838   UUAGCCCCUUCAAUCCCCUUG   1858 Target Full Sequence	2.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:21   AAUCGGGGAGGUUAGGGGAAG   1   |||||||||||||||||||*| targets:3499   UUAGCCCCUCCAAUCCCCUCC   3519 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:21   AAUCGGGGAGGUUAGGGGAAG   1   |||||||||||||||||||*| targets:3534   UUAGCCCCUCCAAUCCCCUCC   3554 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
AY108273.1	ncRNA:21   AAUCGGGGAGGUUAGGGGAAG   1   |||||||||||||||||||*= targets:331   UUAGCCCCUCCAAUCCCCUCU   351 Target Full Sequence	2.5	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget
BT065170.1	ncRNA:21   AAUCGGGGAGGUUAGGGGAAG   1   |||*|||||||||||||||*| targets:683   UUAUCCCCUCCAAUCCCCUCC   703 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:21   AAUCGGGGAGGUUAGGGGAAG   1   |||*|||||||||||||||*| targets:1030   UUAACCCCUCCAAUCCCCUCC   1050 Target Full Sequence	2.5	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:21   AAUCGGGGAGGUUAGGGGAAG   1   |||*|||||||||||||||*| targets:1563   UUAUCCCCUCCAAUCCCCUCC   1583 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:21   AAUCGGGGAGGUUAGGGGAAG   1   |||*|||||||||||||||*| targets:1583   UUAUCCCCUCCAAUCCCCUCC   1603 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:21   AAUCGGGGAGGUUAGGGGAAG   1   |||*|||||||||||||||*| targets:1607   UUAUCCCCUCCAAUCCCCUCC   1627 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:21   AAUCGGGGAGGUUAGGGGAAG   1   |||*|||||||||||||||*| targets:1640   UUAUCCCCUCCAAUCCCCUCC   1660 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget