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BaseInfo

ncRNA ID	novel_zma_miR3224
Species	Zea mays
Class	miRNA
Genome position	Chr4:192778885-192779057 [-]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	1 - AACGCUUGAUGUGAUCCGGGCUAA - 24
Stem-loop(if miRNA)	--     AU   C      A       ACCUCCGUUCC      U        -  G     -UAAA    -       AGCCGAAGA   AGCCC  GUC CAUCGA UGUUUGA           GGGUAU AAAUGUAG UC GAUUA     ACUA AUUUGUC         U   |||||  ||| |||||| |||||||           |||||| |||||||| || |||||     |||| |||||||   UCGGG  UAG GUAGUU GCAAACU           CUCAUA UUUAUAUC GG UUGGU     UGAU UAAGCAG         U AA     CC   U      C       GUAAAUUUAUC      C        U  G     UGACC    C       AGCAGAAAA
Stem-loop sequence	AGCCCAUGUCCCAUCGAAUGUUUGAACCUCCGUUCCGGGUAUUAAAUGUAGUCGGAUUAUAAAACUAAUUUGUCAGCCGAAGAUUAAAAGACGAGACGAAUCUAGUCCAGUUGGUUGGGUCUAUAUUUCAUACUCCUAUUUAAAUGUCAAACGCUUGAUGUGAUCCGGGCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT084930.2	ncRNA:24   AAUCGGGCCUAGUGUAGUUCGCAA   1   |||||||||=|||||||||||||| targets:149   UUAGCCCGGGUCACAUCAAGCGUU   172 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0209B02 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008671848.2	ncRNA:24   AAUCGGGCCUAGUGUAGUUCGCAA   1   |||||||||=|||||||||||||| targets:666   UUAGCCCGGGUCACAUCAAGCGUU   689 Target Full Sequence	1.0	PREDICTED: Zea mays subtilisin-like protease SBT3.3 (LOC103647304), mRNA	NA	coding protein	psRNATarget
XM_020540529.1	ncRNA:24   AAUCGGGCCUAGUGUAGUUCGCAA   1   |||||||||=|||||||||||||| targets:1109   UUAGCCCGGGUCACAUCAAGCGUU   1132 Target Full Sequence	1.0	PREDICTED: Zea mays catalytic/ hydrolase (LOC100282156), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ238481.1	ncRNA:24   AAUCGGGCCUAGUGUAGUUCGCAA   1   |||||||||=||||||=||||||| targets:41   UUAGCCCGGGUCACAUUAAGCGUU   64 Target Full Sequence	2.5	Sequence 4476 from Patent EP2985353	NA	coding protein	psRNATarget
HI406351.1	ncRNA:24   AAUCGGGCCUAGUGUAGUUCGCAA   1   |||||||||=||||||=||||||| targets:41   UUAGCCCGGGUCACAUUAAGCGUU   64 Target Full Sequence	2.5	Sequence 4476 from Patent EP2074227	NA	coding protein	psRNATarget
JB166812.1	ncRNA:24   AAUCGGGCCUAGUGUAGUUCGCAA   1   |||||||||=||||||=||||||| targets:41   UUAGCCCGGGUCACAUUAAGCGUU   64 Target Full Sequence	2.5	Sequence 4476 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008654002.2	ncRNA:24   AAUCGGGCCUAGUGUAGUUCGCAA   1   |||||=|||=|||||||||||||| targets:709   UUAGCUCGGGUCACAUCAAGCGUU   732 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC103632177), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008654001.2	ncRNA:24   AAUCGGGCCUAGUGUAGUUCGCAA   1   |||||=|||=|||||||||||||| targets:708   UUAGCUCGGGUCACAUCAAGCGUU   731 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC103632177), transcript variant X1, mRNA	NA	coding protein	psRNATarget