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BaseInfo

ncRNA ID	novel_zma_miR3223
Species	Zea mays
Class	miRNA
Genome position	Chr4:216307433-216307591 [-]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	136 - UAGUUGAACUAUUAGCUAGGAUGU - 159
Stem-loop(if miRNA)	--U   UG  C    A     G      GAUGUCUCCAACUAA       -CA      -       CAAACACCCCUAAA    AGU  AA UAUU GCUAG AUGUUU               UUUUAGU   GCUUUA GUGCAUU              A    |||  || |||| ||||| ||||||               |||||||   |||||| |||||||    UUA  UU AUAG CGGUC UGCAAA               AAAAUCA   CGGAGU UACGUGA              C AGU   GU  U    A     A      -AGCCAACUCAAACA       CAA      A       UCUUCAACACAAUU
Stem-loop sequence	UAGUUGAACUAUUAGCUAGGAUGUUUGAUGUCUCCAACUAAUUUUAGUCAGCUUUAGUGCAUUCAAACACCCCUAAAACUUAACACAACUUCUAGUGCAUAUGAGGCAACACUAAAAACAAACUCAACCGAAAACGUACUGGCAGAUAUUUUGAUUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT084681.1	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   ||||||||||||||||||=||||| targets:396   ACAUCCUAGCUAAUAGUUUAACUA   419 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0157D18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |||*|||||||||||||||||||| targets:2011   ACACCCUAGCUAAUAGUUCAACUA   2034 Target Full Sequence	0.0	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |||*=||||||||||||||||||| targets:721   ACAAUCUAGCUAAUAGUUCAACUA   744 Target Full Sequence	0.0	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020548642.1	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |||*|||||||||||||||||||| targets:2160   ACACCCUAGCUAAUAGUUCAACUA   2183 Target Full Sequence	0.0	PREDICTED: Zea mays ubiquitin-like-specific protease ESD4 (LOC103647934), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020548642.1	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |=*|*=|||||||||*|||||||| targets:2183   AUUUGUUAGCUAAUAAUUCAACUA   2206 Target Full Sequence	2.5	PREDICTED: Zea mays ubiquitin-like-specific protease ESD4 (LOC103647934), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669572.2	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |||*|||||||||||||||||||| targets:2124   ACACCCUAGCUAAUAGUUCAACUA   2147 Target Full Sequence	0.0	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669572.2	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |=*|*=|||||||||*|||||||| targets:2147   AUUUGUUAGCUAAUAAUUCAACUA   2170 Target Full Sequence	2.5	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669570.2	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |||*|||||||||||||||||||| targets:1914   ACACCCUAGCUAAUAGUUCAACUA   1937 Target Full Sequence	0.0	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008669570.2	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |=*|*=|||||||||*|||||||| targets:1937   AUUUGUUAGCUAAUAAUUCAACUA   1960 Target Full Sequence	2.5	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547655.1	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |||*|||||||||||||||||||| targets:1870   ACACCCUAGCUAAUAGUUCAACUA   1893 Target Full Sequence	0.0	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020547655.1	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |=*|*=|||||||||*|||||||| targets:1893   AUUUGUUAGCUAAUAAUUCAACUA   1916 Target Full Sequence	2.5	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020542504.1	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |||*|||||||||||||||||||| targets:2399   ACACCCUAGCUAAUAGUUCAACUA   2422 Target Full Sequence	0.0	PREDICTED: Zea mays B3 domain-containing protein Os03g0120900 (LOC103636243), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001152524.1	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |||*|||||||||||||||||||| targets:2189   ACACCCUAGCUAAUAGUUCAACUA   2212 Target Full Sequence	0.0	Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), mRNA	NA	coding protein	psRNATarget
NM_001152524.1	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |=*|*=|||||||||*|||||||| targets:2212   AUUUGUUAGCUAAUAAUUCAACUA   2235 Target Full Sequence	2.5	Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), mRNA	NA	coding protein	psRNATarget
BT063004.1	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |||*|||||||||||||||||||| targets:2189   ACACCCUAGCUAAUAGUUCAACUA   2212 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0016A10 mRNA, complete cds	NA	coding protein	psRNATarget
BT063004.1	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |=*|*=|||||||||*|||||||| targets:2212   AUUUGUUAGCUAAUAAUUCAACUA   2235 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0016A10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196102.1	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |||||||||||||||||||||*|| targets:1143   ACAUCCUAGCUAAUAGUUCAAAUA   1166 Target Full Sequence	1.5	Zea mays uncharacterized LOC100501358 (LOC100501358), mRNA	NA	coding protein	psRNATarget
BT085123.2	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |||||||||||||||||||||*|| targets:1143   ACAUCCUAGCUAAUAGUUCAAAUA   1166 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0296D08 mRNA, complete cds	NA	coding protein	psRNATarget
HI402970.1	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |||*|||||||||||||||||||| targets:67   ACACCCUAGCUAAUAGUUCAACUA   90 Target Full Sequence	0.0	Sequence 1095 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235100.1	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |||*|||||||||||||||||||| targets:67   ACACCCUAGCUAAUAGUUCAACUA   90 Target Full Sequence	0.0	Sequence 1095 from Patent EP2985353	NA	coding protein	psRNATarget
JB163431.1	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |||*|||||||||||||||||||| targets:67   ACACCCUAGCUAAUAGUUCAACUA   90 Target Full Sequence	0.0	Sequence 1095 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020545827.1	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |||*=||||||||||||||||||| targets:981   ACAGUCUAGCUAAUAGUUCAACUA   1004 Target Full Sequence	0.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like (LOC103641135), transcript variant X11, mRNA	NA	coding protein	psRNATarget
NM_001147983.1	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |||*||||||||||||||||=||| targets:1719   ACAACCUAGCUAAUAGUUCAGCUA   1742 Target Full Sequence	1.5	Zea mays zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (LOC100273565), mRNA	NA	coding protein	psRNATarget
BT041400.1	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |||*||||||||||||||||=||| targets:1719   ACAACCUAGCUAAUAGUUCAGCUA   1742 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0115C19 mRNA, complete cds	NA	coding protein	psRNATarget
EZ086734.1	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |||*||||||||||||||||=||| targets:25   ACACCCUAGCUAAUAGUUCAGCUA   48 Target Full Sequence	1.5	TSA: Zea mays contig22380, mRNA sequence	NA	coding protein	psRNATarget
XM_008646094.2	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |=|*=|||||||||||||||=||| targets:668   AUAAUCUAGCUAAUAGUUCAGCUA   691 Target Full Sequence	1.5	PREDICTED: Zea mays inactive poly [ADP-ribose] polymerase RCD1 (LOC103625711), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU951762.1	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   ||||=*||*=|||||||||||||| targets:599   ACAUUYUAUUUAAUAGUUCAACUA   622 Target Full Sequence	3.0	Zea mays clone 998418 mRNA sequence	NA	coding protein	psRNATarget
XM_008679129.2	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |=|*=|||*||||||||||||||| targets:1449   AUAGUCUAUCUAAUAGUUCAACUA   1472 Target Full Sequence	1.0	PREDICTED: Zea mays auxin response factor 75 (LOC100283409), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU962911.1	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |||*=||||*|||||*|||||||| targets:1246   ACAAUCUAGGUAAUAAUUCAACUA   1269 Target Full Sequence	2.5	Zea mays clone 246488 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150283.1	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |||*=||||*|||||*|||||||| targets:1246   ACAAUCUAGGUAAUAAUUCAACUA   1269 Target Full Sequence	2.5	Zea mays Calcium-dependent phosphotriesterase superfamily protein (LOC100276515), mRNA	NA	coding protein	psRNATarget
EU968401.1	ncRNA:24   UGUAGGAUCGAUUAUCAAGUUGAU   1   |||*=||||*|||||*|||||||| targets:1267   ACAAUCUAGGUAAUAAUUCAACUA   1290 Target Full Sequence	2.5	Zea mays clone 320404 mRNA sequence	NA	coding protein	psRNATarget