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BaseInfo

ncRNA ID osa-miR156f-3p
Species Oryza sativa
Class miRNA
Genome position Chr8:21478230-21478415 [+]
Reference genome MSU7
Source miRBase
Length 22
Mature sequence(if miRNA) 164 - GCUCACUUCUCUUUCUGUCAGC - 185
Stem-loop(if miRNA)            -    -        A       C  A   -  -  GAUCUAUCAAUCUUCCCUUCGACAGGAUAGCUAGAUAGAAAGAAAGAGA
AGUUGACAGAA GAGA GUGAGCAC CAGCGGC AG CUG CA UC                                                 G
||||||||||| |||| |||||||| ||||||| || ||| || ||
UCGACUGUCUU CUCU CACUCGUG GUCGCCG UC GAC UA UA                                                 G
           U    U        C       -  -   A  G  GUAGUAGUAAAGUAGAGAGAGAGAGAGAGAGAAGGUACCGGCGGCUGCC
Stem-loop sequence AGUUGACAGAAGAGAGUGAGCACACAGCGGCCAGACUGCAUCGAUCUAUCAAUCUUCCCUUCGACAGGAUAGCUAGAUAGAAAGAAAGAGAGGCCGUCGGCGGCCAUGGAAGAGAGAGAGAGAGAGAGAUGAAAUGAUGAUGAUGAUACAGCUGCCGCUGCGUGCUCACUUCUCUUUCUGUCAGCU

Reference

1 PMID:12101121
"MicroRNAs in plants";
Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
Genes Dev. 16:1616-1626(2002).
2 PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors";
Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
PLoS Pathog. 7:e1002176(2011).