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BaseInfo

ncRNA ID novel_zma_miR3219
Species Zea mays
Class miRNA
Genome position Chr4:236866766-236866824 [-]
Reference genome RefGen_v4
Source SRR2089715
Length 21
Mature sequence(if miRNA) 39 - GCUGCGGGGGCGCGGACGGUC - 59
Stem-loop(if miRNA) --     G   GC      G     - GGA
  GCUGC GGG  GCGGAC GUCCG C   U
  ||||| |||  |||||| ||||| |
  CGGCG UCC  CGUCUG CAGGC G   C
GA     G   AA      G     U GAU
Stem-loop sequence GCUGCGGGGGCGCGGACGGUCCGCGGAUCUAGGUCGGACGGUCUGCAACCUGGCGGCAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT039435.1
ncRNA:21   CUGGCAGGCGCGGGGGCGUCG   1
  |||||||||||||=||||||*
targets:305   GACCGUCCGCGCCUCCGCAGA   325

2.5 Zea mays full-length cDNA clone ZM_BFc0013G13 mRNA, complete cds NA coding protein psRNATarget
BT054463.1
ncRNA:21   CUGG-CAGGCGCGGGGGCGUCG   1
  ||||-|||*|||||||||||||
targets:1786   GACCCGUCGGCGCCCCCGCAGC   1807

3.0 Zea mays full-length cDNA clone ZM_BFc0072N20 mRNA, complete cds NA coding protein psRNATarget
BT053887.1
ncRNA:21   CUGG-CAGGCGCGGGGGCGUCG   1
  ||||-|||*|||||||||||||
targets:1797   GACCCGUCGGCGCCCCCGCAGC   1818

3.0 Zea mays full-length cDNA clone ZM_BFc0013C19 mRNA, complete cds NA coding protein psRNATarget
EU974772.1
ncRNA:21   CUGG-CAGGCGCGGGGGCGUCG   1
  ||||-|||*|||||||||||||
targets:1795   GACCCGUCGGCGCCCCCGCAGC   1816

3.0 Zea mays clone 457868 transposon protein Mutator sub-class mRNA, complete cds NA coding protein psRNATarget
NM_001158827.1
ncRNA:21   CUGG-CAGGCGCGGGGGCGUCG   1
  ||||-|||*|||||||||||||
targets:1795   GACCCGUCGGCGCCCCCGCAGC   1816

3.0 Zea mays putative phototropic-resoponsive NPH3 family protein (LOC100285938), mRNA NA coding protein psRNATarget
XM_020541477.1
ncRNA:21   CUGGCAGGCGCGGGGGCGUCG   1
  *=||||||||||||*||||||
targets:268   CGCCGUCCGCGCCCACGCAGC   288

1.5 PREDICTED: Zea mays atherin-like (LOC109941029), mRNA NA coding protein psRNATarget
XM_008671616.2
ncRNA:21   CUGGCAGGCGCGGGGGCGUCG   1
  *=|=||||||||||||||*||
targets:224   CGCUGUCCGCGCCCCCGCCGC   244

2.5 PREDICTED: Zea mays leucine-rich repeat extensin-like protein 3 (LOC103647049), mRNA NA coding protein psRNATarget
DQ245488.1
ncRNA:21   CUGGCAGGCGCGGGGGCGUCG   1
  *=|=||||||||||||||*||
targets:315   CGCUGUCCGCGCCCCCGCCGC   335

2.5 Zea mays clone 16094 mRNA sequence NA coding protein psRNATarget
BT066879.1
ncRNA:21   CUGGCAGGCGCGGGGGCGUCG   1
  *=|||*|||=|||||||||||
targets:648   CGCCGCCCGUGCCCCCGCAGC   668

2.5 Zea mays full-length cDNA clone ZM_BFb0088C14 mRNA, complete cds NA coding protein psRNATarget
BT069221.1
ncRNA:21   CUGGCAGGCGCGGGGGCGUCG   1
  *=|||*|||=|||||||||||
targets:648   CGCCGCCCGUGCCCCCGCAGC   668

2.5 Zea mays full-length cDNA clone ZM_BFb0347F09 mRNA, complete cds NA coding protein psRNATarget
BT061301.1
ncRNA:21   CUGGCAGGCGCGGGGGCGUCG   1
  *=|||*|||=|||||||||||
targets:640   CGCCGCCCGUGCCCCCGCAGC   660

2.5 Zea mays full-length cDNA clone ZM_BFb0132N15 mRNA, complete cds NA coding protein psRNATarget
NM_001174291.1
ncRNA:21   CUGGCAGGCGCGGGGGCGUCG   1
  *=|||*|||=|||||||||||
targets:640   CGCCGCCCGUGCCCCCGCAGC   660

2.5 Zea mays Octicosapeptide/Phox/Bem1p family protein (LOC100381453), mRNA NA coding protein psRNATarget
EU963399.1
ncRNA:21   CUGGCAGGCGCGGGGGCGUCG   1
  *=|||*|||=|||||||||||
targets:696   CGCCGCCCGUGCCCCCGCAGC   716

2.5 Zea mays clone 261897 mRNA sequence NA coding protein psRNATarget
XM_008655190.2
ncRNA:21   CUGGCAGGCGCGGGGGCGUCG   1
  *==||||||||||*|||||||
targets:517   CGUCGUCCGCGCCGCCGCAGC   537

2.5 PREDICTED: Zea mays probable galacturonosyltransferase-like 4 (LOC103633507), mRNA NA coding protein psRNATarget
XM_008671314.2
ncRNA:21   CUGGCAGGCGCGGGGGCGUCG   1
  **||*|=||||||||||||||
targets:153   AUCCAUUCGCGCCCCCGCAGC   173

2.0 PREDICTED: Zea mays putative receptor-like protein kinase (LOC103646603), transcript variant X7, mRNA NA coding protein psRNATarget
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