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BaseInfo

ncRNA ID	novel_zma_miR3218
Species	Zea mays
Class	miRNA
Genome position	Chr7:8250127-8250293 [-]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2638137;SRR2647221;SRR2647343;SRR2647386;SRR2647387;SRR2647391;SRR2647467;SRR1583943
Length	24
Mature sequence(if miRNA)	144 - AAUUAUUCCGGCUAAUCAAAGUUU - 167
Stem-loop(if miRNA)	--   UA         A                   U            GUUC                    ----   - UUGU   AAU  UUCCGGCUA UCAAAGUUUAUAUAAAUUA AGAAGCAAUCCG    GGAAUCGUUCCGACCCACCA    GGC C    U   |||  ||||||||| ||||||||||||||||||| ||||||||||||    ||||||||||||||||||||    ||| |   UUA  AAGGUCGAU AGUUUCAAAUAUAUUUAAU UCUUCGUUAGGC    CCUUAGCAAGGCUGGGUGGU    CCG G    C CC   GC         C                   C            AAAU                    UAAG   U UUUG
Stem-loop sequence	AAUUAUUCCGGCUAAUCAAAGUUUAUAUAAAUUAUAGAAGCAAUCCGGUUCGGAAUCGUUCCGACCCACCAGGCCUUGUUCGUUUGUGCCGAAUUGGUGGGUCGGAACGAUUCCUAAACGGAUUGCUUCUCUAAUUUAUAUAAACUUUGACUAGCUGGAACGAUUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020539417.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:3799   AAACUUUGAUUAGCCGGAAUGAUU   3822 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020539392.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:3549   AAACUUUGAUUAGCCGGAAUGAUU   3572 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539386.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:3531   AAACUUUGAUUAGCCGGAAUGAUU   3554 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020539406.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:3514   AAACUUUGAUUAGCCGGAAUGAUU   3537 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020539404.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:3496   AAACUUUGAUUAGCCGGAAUGAUU   3519 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008676981.2	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:60   AAACUUUGAUUAGCCGGAAUGAUU   83 Target Full Sequence	1.5	PREDICTED: Zea mays protein MALE DISCOVERER 1 (LOC103651364), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT088026.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:1258   AAACUUUGAUUAGCCGGAAUGAUU   1281 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0366I22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196885.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:1258   AAACUUUGAUUAGCCGGAAUGAUU   1281 Target Full Sequence	1.5	Zea mays Protein kinase superfamily protein (LOC100502407), mRNA	NA	coding protein	psRNATarget
JB166367.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:82   AAACUUUGAUUAGCCGGAAUGAUU   105 Target Full Sequence	1.5	Sequence 4031 from Patent EP2559767	NA	coding protein	psRNATarget
JB166371.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:82   AAACUUUGAUUAGCCGGAAUGAUU   105 Target Full Sequence	1.5	Sequence 4035 from Patent EP2559767	NA	coding protein	psRNATarget
HI405905.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:82   AAACUUUGAUUAGCCGGAAUGAUU   105 Target Full Sequence	1.5	Sequence 4030 from Patent EP2074227	NA	coding protein	psRNATarget
HI405906.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:82   AAACUUUGAUUAGCCGGAAUGAUU   105 Target Full Sequence	1.5	Sequence 4031 from Patent EP2074227	NA	coding protein	psRNATarget
HI405910.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:82   AAACUUUGAUUAGCCGGAAUGAUU   105 Target Full Sequence	1.5	Sequence 4035 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238040.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:82   AAACUUUGAUUAGCCGGAAUGAUU   105 Target Full Sequence	1.5	Sequence 4035 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238035.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:82   AAACUUUGAUUAGCCGGAAUGAUU   105 Target Full Sequence	1.5	Sequence 4030 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238036.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:82   AAACUUUGAUUAGCCGGAAUGAUU   105 Target Full Sequence	1.5	Sequence 4031 from Patent EP2985353	NA	coding protein	psRNATarget
JB166366.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:82   AAACUUUGAUUAGCCGGAAUGAUU   105 Target Full Sequence	1.5	Sequence 4030 from Patent EP2559767	NA	coding protein	psRNATarget
HI405934.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:81   AAACUUUGAUUAGCCGGAAUGAUU   104 Target Full Sequence	1.5	Sequence 4059 from Patent EP2074227	NA	coding protein	psRNATarget
JB166389.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:81   AAACUUUGAUUAGCCGGAAUGAUU   104 Target Full Sequence	1.5	Sequence 4053 from Patent EP2559767	NA	coding protein	psRNATarget
HI405931.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:81   AAACUUUGAUUAGCCGGAAUGAUU   104 Target Full Sequence	1.5	Sequence 4056 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238058.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:81   AAACUUUGAUUAGCCGGAAUGAUU   104 Target Full Sequence	1.5	Sequence 4053 from Patent EP2985353	NA	coding protein	psRNATarget
JB166392.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:81   AAACUUUGAUUAGCCGGAAUGAUU   104 Target Full Sequence	1.5	Sequence 4056 from Patent EP2559767	NA	coding protein	psRNATarget
HI405928.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:81   AAACUUUGAUUAGCCGGAAUGAUU   104 Target Full Sequence	1.5	Sequence 4053 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238061.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:81   AAACUUUGAUUAGCCGGAAUGAUU   104 Target Full Sequence	1.5	Sequence 4056 from Patent EP2985353	NA	coding protein	psRNATarget
JB166395.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:81   AAACUUUGAUUAGCCGGAAUGAUU   104 Target Full Sequence	1.5	Sequence 4059 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238064.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:81   AAACUUUGAUUAGCCGGAAUGAUU   104 Target Full Sequence	1.5	Sequence 4059 from Patent EP2985353	NA	coding protein	psRNATarget
JB166422.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:80   AAACUUUGAUUAGCCGGAAUGAUU   103 Target Full Sequence	1.5	Sequence 4086 from Patent EP2559767	NA	coding protein	psRNATarget
HI405961.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:80   AAACUUUGAUUAGCCGGAAUGAUU   103 Target Full Sequence	1.5	Sequence 4086 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238091.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   ||||||||||||||||||||=||| targets:80   AAACUUUGAUUAGCCGGAAUGAUU   103 Target Full Sequence	1.5	Sequence 4086 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008667124.2	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   |||=||||||||||=||||||||| targets:2512   AAAUUUUGAUUAGCUGGAAUAAUU   2535 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008667123.2	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   |||=||||||||||=||||||||| targets:2490   AAAUUUUGAUUAGCUGGAAUAAUU   2513 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020538731.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   |||||||*||||||=||||||||| targets:5309   AAACUUUAAUUAGCUGGAAUAAUU   5332 Target Full Sequence	2.5	PREDICTED: Zea mays UDP-glucose:glycoprotein glucosyltransferase (LOC103627875), mRNA	NA	coding protein	psRNATarget
HI405914.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   |||||||*||||||=||||||||| targets:82   AAACUUUAAUUAGCUGGAAUAAUU   105 Target Full Sequence	2.5	Sequence 4039 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238044.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   |||||||*||||||=||||||||| targets:82   AAACUUUAAUUAGCUGGAAUAAUU   105 Target Full Sequence	2.5	Sequence 4039 from Patent EP2985353	NA	coding protein	psRNATarget
JB166375.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   |||||||*||||||=||||||||| targets:82   AAACUUUAAUUAGCUGGAAUAAUU   105 Target Full Sequence	2.5	Sequence 4039 from Patent EP2559767	NA	coding protein	psRNATarget
JB166331.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   |||||||*||||||=||||||||| targets:71   AAACUUUAAUUAGCUGGAAUAAUU   94 Target Full Sequence	2.5	Sequence 3995 from Patent EP2559767	NA	coding protein	psRNATarget
HI405870.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   |||||||*||||||=||||||||| targets:71   AAACUUUAAUUAGCUGGAAUAAUU   94 Target Full Sequence	2.5	Sequence 3995 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238000.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   |||||||*||||||=||||||||| targets:71   AAACUUUAAUUAGCUGGAAUAAUU   94 Target Full Sequence	2.5	Sequence 3995 from Patent EP2985353	NA	coding protein	psRNATarget
EU956994.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   |=*|||||*||||*|||||||||| targets:2084   AGUCUUUGUUUAGACGGAAUAAUU   2107 Target Full Sequence	2.5	Zea mays clone 1579813 mRNA sequence	NA	coding protein	psRNATarget
NM_001176191.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   |=*|||||*||||*|||||||||| targets:1954   AGUCUUUGUUUAGACGGAAUAAUU   1977 Target Full Sequence	2.5	Zea mays Pentatricopeptide repeat-containing protein chloroplastic (LOC100383543), mRNA	NA	coding protein	psRNATarget
BT067526.1	ncRNA:24   UUUGAAACUAAUCGGCCUUAUUAA   1   |=*|||||*||||*|||||||||| targets:1954   AGUCUUUGUUUAGACGGAAUAAUU   1977 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0075E21 mRNA, complete cds	NA	coding protein	psRNATarget