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BaseInfo

ncRNA ID	novel_zma_miR3217
Species	Zea mays
Class	miRNA
Genome position	Chr4:20884238-20884378 [+]
Reference genome	RefGen_v4
Source	SRR2089715
Length	21
Mature sequence(if miRNA)	1 - ACCGGACUGUCCGAUGUGCUA - 21
Stem-loop(if miRNA)	--       U     AUG       --     GU        --CACC  -     UCAA    AAACUUGCCA  U   ACCGGAC GUCCG   UGCUACA  GGACA  GUCUGGUG      AG GGAGC    CUCC          CC U   ||||||| |||||   |||||||  |||||  ||||||||      || |||||    ||||          ||   UGGCCUG CAGGC   ACGAUGU  CCUGU  CAGAUCAC      UC CCUCG    GAGG          GG C UG       U     --A       AG     --        UUAAUA  G     -CCG    ---GACUUAA  G
Stem-loop sequence	ACCGGACUGUCCGAUGUGCUACAGGACAGUGUCUGGUGCACCAGGGAGCUCAACUCCAAACUUGCCACCUUCGGGAAUUCAGGGAGGCCGCUCCGCUAUAAUUCACUAGACUGUCCGAUGUAGCAACGGACUGUCCGGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ241540.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|||||*||||||||||||| targets:13   UGGCACACCGGACAGUCCGGU   33 Target Full Sequence	1.0	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|==||*||||||||||||| targets:94   UGGUGCACCGGACAGUCCGGU   114 Target Full Sequence	3.0	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
JB169871.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|||||*||||||||||||| targets:13   UGGCACACCGGACAGUCCGGU   33 Target Full Sequence	1.0	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
JB169871.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|==||*||||||||||||| targets:94   UGGUGCACCGGACAGUCCGGU   114 Target Full Sequence	3.0	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
HI409410.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|||||*||||||||||||| targets:13   UGGCACACCGGACAGUCCGGU   33 Target Full Sequence	1.0	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
HI409410.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|==||*||||||||||||| targets:94   UGGUGCACCGGACAGUCCGGU   114 Target Full Sequence	3.0	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
EZ106959.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|||||*||||||||||||| targets:97   UGGCACACCGGACAGUCCGGU   117 Target Full Sequence	1.0	TSA: Zea mays contig42617, mRNA sequence	NA	coding protein	psRNATarget
BT065201.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|||||*||||||||||||| targets:725   UGGCACACCGGACAGUCCGGU   745 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:744   GUGCACACCGGACAGUCCGGU   764 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   *=|==||*||||||||||||| targets:587   GGGUGCACCGGACAGUCCGGU   607 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=*|*||*||||||||||||| targets:816   UGUCCCACCGGACAGUCCGGU   836 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|||||*||||||||||||| targets:698   UGGCACACCGGACAGUCCGGU   718 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|||||*||||||||||||| targets:800   UGGCACACCGGACAGUCCGGU   820 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||=||*||||||||||||| targets:476   UGGCGCACCGGACAGUCCGGU   496 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||*|||||||||||||||| targets:623   UGGCUCAUCGGACAGUCCGGU   643 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||=||*||||||||||||| targets:492   UGGCGCACCGGACAGUCCGGU   512 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||=||*||||||||||||| targets:781   UGGCGCACCGGACAGUCCGGU   801 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=*|*|||||||||||||||| targets:700   UGACUCAUCGGACAGUCCGGU   720 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
BT066013.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||*|||||||||||||||| targets:623   UGGCUCAUCGGACAGUCCGGU   643 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066013.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||=||*||||||||||||| targets:492   UGGCGCACCGGACAGUCCGGU   512 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066013.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||=||*||||||||||||| targets:781   UGGCGCACCGGACAGUCCGGU   801 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066013.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=*|*|||||||||||||||| targets:700   UGACUCAUCGGACAGUCCGGU   720 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
EU940845.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|||||*||||||||||||| targets:1382   UGGCACACCGGACAGUCCGGU   1402 Target Full Sequence	1.0	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
EU940845.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:1401   GUGCACACCGGACAGUCCGGU   1421 Target Full Sequence	1.0	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
LQ241068.1	ncRNA:21   AUCGUG-UAGCCUGUCAGGCCA   1   **||||-|*||||||||||||| targets:32   GUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 7063 from Patent EP2985353	NA	coding protein	psRNATarget
JB169399.1	ncRNA:21   AUCGUG-UAGCCUGUCAGGCCA   1   **||||-|*||||||||||||| targets:32   GUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 7063 from Patent EP2559767	NA	coding protein	psRNATarget
HI408938.1	ncRNA:21   AUCGUG-UAGCCUGUCAGGCCA   1   **||||-|*||||||||||||| targets:32   GUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 7063 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242062.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|||||*|||||||||=||| targets:12   UGGCACACCGGACAGUCUGGU   32 Target Full Sequence	2.5	Sequence 8057 from Patent EP2985353	NA	coding protein	psRNATarget
LQ242062.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||*||*||||||||||||| targets:32   UGGCCCACCGGACAGUCCGGU   52 Target Full Sequence	2.0	Sequence 8057 from Patent EP2985353	NA	coding protein	psRNATarget
JB170393.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|||||*|||||||||=||| targets:12   UGGCACACCGGACAGUCUGGU   32 Target Full Sequence	2.5	Sequence 8057 from Patent EP2559767	NA	coding protein	psRNATarget
JB170393.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||*||*||||||||||||| targets:32   UGGCCCACCGGACAGUCCGGU   52 Target Full Sequence	2.0	Sequence 8057 from Patent EP2559767	NA	coding protein	psRNATarget
HI409932.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|||||*|||||||||=||| targets:12   UGGCACACCGGACAGUCUGGU   32 Target Full Sequence	2.5	Sequence 8057 from Patent EP2074227	NA	coding protein	psRNATarget
HI409932.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||*||*||||||||||||| targets:32   UGGCCCACCGGACAGUCCGGU   52 Target Full Sequence	2.0	Sequence 8057 from Patent EP2074227	NA	coding protein	psRNATarget
EZ065990.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||=||*||||||||||||| targets:1   UGGCGCACCGGACAGUCCGGU   21 Target Full Sequence	2.0	TSA: Zea mays contig01624, mRNA sequence	NA	coding protein	psRNATarget
EZ066204.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||=||*||||||||||||| targets:92   UGGCGCACCGGACAGUCCGGU   112 Target Full Sequence	2.0	TSA: Zea mays contig01838, mRNA sequence	NA	coding protein	psRNATarget
EZ109126.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||=||*||||||||||||| targets:176   UGGCGCACCGGACAGUCCGGU   196 Target Full Sequence	2.0	TSA: Zea mays contig44785, mRNA sequence	NA	coding protein	psRNATarget
BT068112.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||=||*||||||||||||| targets:377   UGGCGCACCGGACAGUCCGGU   397 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:472   GUGCACACCGGACAGUCCGGU   492 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:602   GUGCACACCGGACAGUCCGGU   622 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||*||*||||||||||||| targets:583   UGGCUCACCGGACAGUCCGGU   603 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:21   AUCGUG-UAGCCUGUCAGGCCA   1   **||||-|*||||||||||||| targets:726   GUGCACCACCGGACAGUCCGGU   747 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||=||*||||||||||||| targets:506   UGGCGCACCGGACAGUCCGGU   526 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||=||*||||||||||||| targets:602   UGGCGCACCGGACAGUCCGGU   622 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:716   GUGCACACCGGACAGUCCGGU   736 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||*||*||||||||||||| targets:697   UGGCUCACCGGACAGUCCGGU   717 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT065921.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||=||*||||||||||||| targets:506   UGGCGCACCGGACAGUCCGGU   526 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||=||*||||||||||||| targets:602   UGGCGCACCGGACAGUCCGGU   622 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:716   GUGCACACCGGACAGUCCGGU   736 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||*||*||||||||||||| targets:697   UGGCUCACCGGACAGUCCGGU   717 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|||||*=|||||||||||| targets:266   UGGCACACUGGACAGUCCGGU   286 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:285   GUGCACACCGGACAGUCCGGU   305 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   *=|==||*||||||||||||| targets:139   GGGUGCACCGGACAGUCCGGU   159 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=*|*||*||||||||||||| targets:356   UGCCUCACCGGACAGUCCGGU   376 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||=||*||||||||||||| targets:582   UGGCGCACCGGACAGUCCGGU   602 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:601   GUGCACACCGGACAGUCCGGU   621 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:699   GUGCACACCGGACAGUCCGGU   719 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   *=||=||*||||||||||||| targets:486   GGGCGCACCGGACAGUCCGGU   506 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||*||*||||||||||||| targets:680   UGGCUCACCGGACAGUCCGGU   700 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:21   AUCGUG-UAGCCUGUCAGGCCA   1   **||||-|*||||||||||||| targets:802   GUGCACCACCGGACAGUCCGGU   823 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT066811.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||=||*||||||||||||| targets:582   UGGCGCACCGGACAGUCCGGU   602 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:601   GUGCACACCGGACAGUCCGGU   621 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:699   GUGCACACCGGACAGUCCGGU   719 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   *=||=||*||||||||||||| targets:486   GGGCGCACCGGACAGUCCGGU   506 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||*||*||||||||||||| targets:680   UGGCUCACCGGACAGUCCGGU   700 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:21   AUCGUG-UAGCCUGUCAGGCCA   1   **||||-|*||||||||||||| targets:802   GUGCACCACCGGACAGUCCGGU   823 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
EU940974.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||=||*||||||||||||| targets:2541   UGGCGCACCGGACAGUCCGGU   2561 Target Full Sequence	2.0	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
EU940974.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||*||*||||||||||||| targets:2752   UGGCUCACCGGACAGUCCGGU   2772 Target Full Sequence	2.0	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
EU940974.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*=|||||||||||| targets:2657   GUGCACACUGGACAGUCCGGU   2677 Target Full Sequence	2.5	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
EU940974.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*|||||||||=||| targets:2771   GUGCACACCGGACAGUCUGGU   2791 Target Full Sequence	2.5	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
JB170574.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|==||*||||||||||||| targets:150   UGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	3.0	Sequence 8238 from Patent EP2559767	NA	coding protein	psRNATarget
HI410113.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|==||*||||||||||||| targets:150   UGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	3.0	Sequence 8238 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242243.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|==||*||||||||||||| targets:150   UGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	3.0	Sequence 8238 from Patent EP2985353	NA	coding protein	psRNATarget
BT069074.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|==||*||||||||||||| targets:764   UGGUGCACCGGACAGUCCGGU   784 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|==||*||||||||||||| targets:824   UGGUGCACCGGACAGUCCGGU   844 Target Full Sequence	3.0	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   *=|==||*||||||||||||| targets:590   GGGUGCACCGGACAGUCCGGU   610 Target Full Sequence	3.0	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
BT061709.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|==||*||||||||||||| targets:824   UGGUGCACCGGACAGUCCGGU   844 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
BT061709.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   *=|==||*||||||||||||| targets:590   GGGUGCACCGGACAGUCCGGU   610 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
BT086229.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|==||*||||||||||||| targets:831   UGGUGCACCGGACAGUCCGGU   851 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
BT086229.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*=|||||||||||| targets:535   GUGCACACUGGACAGUCCGGU   555 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
JB170509.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:111   GUGCACACCGGACAGUCCGGU   131 Target Full Sequence	1.0	Sequence 8173 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242178.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:111   GUGCACACCGGACAGUCCGGU   131 Target Full Sequence	1.0	Sequence 8173 from Patent EP2985353	NA	coding protein	psRNATarget
HI410048.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:111   GUGCACACCGGACAGUCCGGU   131 Target Full Sequence	1.0	Sequence 8173 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:624   GUGCACACCGGACAGUCCGGU   644 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:738   GUGCACACCGGACAGUCCGGU   758 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:841   GUGCACACCGGACAGUCCGGU   861 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   *=||=||*||||||||||||| targets:498   GGGCGCACCGGACAGUCCGGU   518 Target Full Sequence	2.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||*||*||||||||||||| targets:719   UGGCUCACCGGACAGUCCGGU   739 Target Full Sequence	2.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT061141.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:624   GUGCACACCGGACAGUCCGGU   644 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:738   GUGCACACCGGACAGUCCGGU   758 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:841   GUGCACACCGGACAGUCCGGU   861 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   *=||=||*||||||||||||| targets:498   GGGCGCACCGGACAGUCCGGU   518 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||*||*||||||||||||| targets:719   UGGCUCACCGGACAGUCCGGU   739 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:449   GUGCACACCGGACAGUCCGGU   469 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:563   GUGCACACCGGACAGUCCGGU   583 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   *=||=||*||||||||||||| targets:333   GGGCGCACCGGACAGUCCGGU   353 Target Full Sequence	2.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||*||*||||||||||||| targets:544   UGGCUCACCGGACAGUCCGGU   564 Target Full Sequence	2.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:21   AUCGUG-UAGCCUGUCAGGCCA   1   **||||-|*||||||||||||| targets:665   GUGCACCACCGGACAGUCCGGU   686 Target Full Sequence	3.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
BT061124.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:449   GUGCACACCGGACAGUCCGGU   469 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:563   GUGCACACCGGACAGUCCGGU   583 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   *=||=||*||||||||||||| targets:333   GGGCGCACCGGACAGUCCGGU   353 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||*||*||||||||||||| targets:544   UGGCUCACCGGACAGUCCGGU   564 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:21   AUCGUG-UAGCCUGUCAGGCCA   1   **||||-|*||||||||||||| targets:665   GUGCACCACCGGACAGUCCGGU   686 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
EU940831.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:297   GUGCACACCGGACAGUCCGGU   317 Target Full Sequence	1.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:411   GUGCACACCGGACAGUCCGGU   431 Target Full Sequence	1.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||*||*||||||||||||| targets:392   UGGCUCACCGGACAGUCCGGU   412 Target Full Sequence	2.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:21   AUCGUG-UAGCCUGUCAGGCCA   1   **||||-|*||||||||||||| targets:535   GUGCACCACCGGACAGUCCGGU   556 Target Full Sequence	3.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EZ108756.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   *=||=||*||||||||||||| targets:147   GGGCGCACCGGACAGUCCGGU   167 Target Full Sequence	2.0	TSA: Zea mays contig44415, mRNA sequence	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:4496   GUGCACACCGGACAGUCCGGU   4516 Target Full Sequence	1.0	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*||||||||||||| targets:4611   GUGCACACCGGACAGUCCGGU   4631 Target Full Sequence	1.0	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   *=||=||*||||||||||||| targets:4380   GGGCGCACCGGACAGUCCGGU   4400 Target Full Sequence	2.0	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:21   AUCGUG-UAGCCUGUCAGGCCA   1   **||||-|*||||||||||||| targets:4713   GUGCACCACCGGACAGUCCGGU   4734 Target Full Sequence	3.0	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
BT066461.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||*||*||||||||||||| targets:708   UGGCUCACCGGACAGUCCGGU   728 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
BT066461.2	ncRNA:21   AUCGUG-UAGCCUGUCAGGCCA   1   **||||-|*||||||||||||| targets:852   GUGCACCACCGGACAGUCCGGU   873 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
BT066461.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|||||*|||*||||||||| targets:613   GUGCACACCGGUCAGUCCGGU   633 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
HI409732.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|||||*|||||*||||||| targets:13   UGGCACACCGGACUGUCCGGU   33 Target Full Sequence	2.5	Sequence 7857 from Patent EP2074227	NA	coding protein	psRNATarget
HI409950.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|||||*|||||*||||||| targets:13   UGGCACACCGGACUGUCCGGU   33 Target Full Sequence	2.5	Sequence 8075 from Patent EP2074227	NA	coding protein	psRNATarget
JB170193.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|||||*|||||*||||||| targets:13   UGGCACACCGGACUGUCCGGU   33 Target Full Sequence	2.5	Sequence 7857 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242080.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|||||*|||||*||||||| targets:13   UGGCACACCGGACUGUCCGGU   33 Target Full Sequence	2.5	Sequence 8075 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241862.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|||||*|||||*||||||| targets:13   UGGCACACCGGACUGUCCGGU   33 Target Full Sequence	2.5	Sequence 7857 from Patent EP2985353	NA	coding protein	psRNATarget
JB170411.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|||||*|||||*||||||| targets:13   UGGCACACCGGACUGUCCGGU   33 Target Full Sequence	2.5	Sequence 8075 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241787.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|||||*||||||*|||||| targets:37   UGGCACACCGGACAAUCCGGU   57 Target Full Sequence	2.5	Sequence 7782 from Patent EP2985353	NA	coding protein	psRNATarget
HI409657.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|||||*||||||*|||||| targets:37   UGGCACACCGGACAAUCCGGU   57 Target Full Sequence	2.5	Sequence 7782 from Patent EP2074227	NA	coding protein	psRNATarget
JB170118.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|||||*||||||*|||||| targets:37   UGGCACACCGGACAAUCCGGU   57 Target Full Sequence	2.5	Sequence 7782 from Patent EP2559767	NA	coding protein	psRNATarget
BT068871.2	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||*||*||||||||||||| targets:690   UGGCUCACCGGACAGUCCGGU   710 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176621.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=||*||*||||||||||||| targets:690   UGGCUCACCGGACAGUCCGGU   710 Target Full Sequence	2.0	Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA	NA	coding protein	psRNATarget
LQ241481.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|=|||*||||||||||||| targets:32   GUGUACACCGGACAGUCCGGU   52 Target Full Sequence	2.0	Sequence 7476 from Patent EP2985353	NA	coding protein	psRNATarget
JB169812.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|=|||*||||||||||||| targets:32   GUGUACACCGGACAGUCCGGU   52 Target Full Sequence	2.0	Sequence 7476 from Patent EP2559767	NA	coding protein	psRNATarget
HI409351.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|=|||*||||||||||||| targets:32   GUGUACACCGGACAGUCCGGU   52 Target Full Sequence	2.0	Sequence 7476 from Patent EP2074227	NA	coding protein	psRNATarget
BT060603.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   |=|||||*|||||*||||||| targets:1062   UGGCACACCGGACUGUCCGGU   1082 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0021N16 mRNA, complete cds	NA	coding protein	psRNATarget
LQ241168.1	ncRNA:21   AUCGUG-UAGCCUGUCAGGCCA   1   **||||-|*||||||||||||| targets:32   GUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 7163 from Patent EP2985353	NA	coding protein	psRNATarget
HI409038.1	ncRNA:21   AUCGUG-UAGCCUGUCAGGCCA   1   **||||-|*||||||||||||| targets:32   GUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 7163 from Patent EP2074227	NA	coding protein	psRNATarget
JB170644.1	ncRNA:21   AUCGUG-UAGCCUGUCAGGCCA   1   **||||-|*||||||||||||| targets:32   GUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 8308 from Patent EP2559767	NA	coding protein	psRNATarget
JB169499.1	ncRNA:21   AUCGUG-UAGCCUGUCAGGCCA   1   **||||-|*||||||||||||| targets:32   GUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 7163 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242313.1	ncRNA:21   AUCGUG-UAGCCUGUCAGGCCA   1   **||||-|*||||||||||||| targets:32   GUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 8308 from Patent EP2985353	NA	coding protein	psRNATarget
HI410183.1	ncRNA:21   AUCGUG-UAGCCUGUCAGGCCA   1   **||||-|*||||||||||||| targets:32   GUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 8308 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241570.1	ncRNA:21   AUCGUG-UAGCCUGUCAGGCCA   1   **||||-|*||||||||||||| targets:32   GUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 7565 from Patent EP2985353	NA	coding protein	psRNATarget
HI409440.1	ncRNA:21   AUCGUG-UAGCCUGUCAGGCCA   1   **||||-|*||||||||||||| targets:32   GUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 7565 from Patent EP2074227	NA	coding protein	psRNATarget
JB169901.1	ncRNA:21   AUCGUG-UAGCCUGUCAGGCCA   1   **||||-|*||||||||||||| targets:32   GUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 7565 from Patent EP2559767	NA	coding protein	psRNATarget
EU950973.1	ncRNA:21   AUCGUGUAGCCUGUCAGGCCA   1   **|==||*||||||||||||| targets:184   GUGUGCACCGGACAGUCCGGU   204 Target Full Sequence	3.0	Zea mays clone 677173 mRNA sequence	NA	coding protein	psRNATarget
JB170370.1	ncRNA:21   AUCGUG-UAGCCUGUCAGGCCA   1   **||||-|*||||||||||||| targets:34   GUGCACCACCGGACAGUCCGGU   55 Target Full Sequence	3.0	Sequence 8034 from Patent EP2559767	NA	coding protein	psRNATarget
HI409909.1	ncRNA:21   AUCGUG-UAGCCUGUCAGGCCA   1   **||||-|*||||||||||||| targets:34   GUGCACCACCGGACAGUCCGGU   55 Target Full Sequence	3.0	Sequence 8034 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242039.1	ncRNA:21   AUCGUG-UAGCCUGUCAGGCCA   1   **||||-|*||||||||||||| targets:34   GUGCACCACCGGACAGUCCGGU   55 Target Full Sequence	3.0	Sequence 8034 from Patent EP2985353	NA	coding protein	psRNATarget