Search result

BaseInfo

ncRNA ID novel_zma_miR3215
Species Zea mays
Class miRNA
Genome position Chr4:213157795-213157880 [+]
Reference genome RefGen_v4
Source SRR2089715
Length 24
Mature sequence(if miRNA) 1 - AUCCAUGGGGAUUGAGGGGGAUUG - 24
Stem-loop(if miRNA) --                          -----GUA    G   G
  AUCCAUGGGGAUUGAGGGGGAUUGGA        GAUU AGG G
  ||||||||||||||||||||||||||        |||| ||| G
  UGGGUACCCCUAACUCUCCCUAACUU        UUAA UUU A
UU                          AGGGGAUG    G   U
Stem-loop sequence AUCCAUGGGGAUUGAGGGGGAUUGGAGUAGAUUGAGGGGGAUUUUGAAUUGUAGGGGAUUCAAUCCCUCUCAAUCCCCAUGGGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020547439.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||||||||||||=||||||
targets:3928   CAAUCCCCCUCAAUCCCUAUGGAU   3951

1.5 PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA NA coding protein psRNATarget
HI407338.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  =||||||||||||||||=||||||
targets:74   UAAUCCCCCUCAAUCCCUAUGGAU   97

1.5 Sequence 5463 from Patent EP2074227 NA coding protein psRNATarget
LQ239468.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  =||||||||||||||||=||||||
targets:74   UAAUCCCCCUCAAUCCCUAUGGAU   97

1.5 Sequence 5463 from Patent EP2985353 NA coding protein psRNATarget
JB167799.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  =||||||||||||||||=||||||
targets:74   UAAUCCCCCUCAAUCCCUAUGGAU   97

1.5 Sequence 5463 from Patent EP2559767 NA coding protein psRNATarget
XM_020546944.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||=||||||||||||||=|
targets:663   CAAUCCCUCUCAAUCCCCAUGGGU   686

2.5 PREDICTED: Zea mays cytochrome b5-like (LOC109943550), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546943.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||=||||||||||||||=|
targets:720   CAAUCCCUCUCAAUCCCCAUGGGU   743

2.5 PREDICTED: Zea mays cytochrome b5-like (LOC109943550), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020537815.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  =||||||||||||||||=||||||
targets:2604   UAAUCCCCCUCAAUCCCUAUGGAU   2627

1.5 PREDICTED: Zea mays uncharacterized protein DDB_G0284459 (LOC103627942), mRNA NA coding protein psRNATarget
XM_008653299.2
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  ==|||||||||||||||=||||||
targets:821   UGAUCCCCCUCAAUCCCUAUGGAU   844

1.5 PREDICTED: Zea mays protein UXT (LOC100284726), transcript variant X1, mRNA NA coding protein psRNATarget
JB166350.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:83   CAAUCCCACUCAAUCCACAUGGAU   106

2.5 Sequence 4014 from Patent EP2559767 NA coding protein psRNATarget
LQ238019.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:83   CAAUCCCACUCAAUCCACAUGGAU   106

2.5 Sequence 4014 from Patent EP2985353 NA coding protein psRNATarget
HI405889.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:83   CAAUCCCACUCAAUCCACAUGGAU   106

2.5 Sequence 4014 from Patent EP2074227 NA coding protein psRNATarget
LQ238032.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:84   CAAUCCCACUCAAUCCACAUGGAU   107

2.5 Sequence 4027 from Patent EP2985353 NA coding protein psRNATarget
HI405902.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:84   CAAUCCCACUCAAUCCACAUGGAU   107

2.5 Sequence 4027 from Patent EP2074227 NA coding protein psRNATarget
JB166363.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:84   CAAUCCCACUCAAUCCACAUGGAU   107

2.5 Sequence 4027 from Patent EP2559767 NA coding protein psRNATarget
LQ237971.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:93   CAAUCCCACUCAAUCCACAUGGAU   116

2.5 Sequence 3966 from Patent EP2985353 NA coding protein psRNATarget
HI405841.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:93   CAAUCCCACUCAAUCCACAUGGAU   116

2.5 Sequence 3966 from Patent EP2074227 NA coding protein psRNATarget
JB166302.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:93   CAAUCCCACUCAAUCCACAUGGAU   116

2.5 Sequence 3966 from Patent EP2559767 NA coding protein psRNATarget
JB163481.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:102   CAAUCCCACUCAAUCCACAUGGAU   125

2.5 Sequence 1145 from Patent EP2559767 NA coding protein psRNATarget
LQ235150.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:102   CAAUCCCACUCAAUCCACAUGGAU   125

2.5 Sequence 1145 from Patent EP2985353 NA coding protein psRNATarget
HI403020.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:102   CAAUCCCACUCAAUCCACAUGGAU   125

2.5 Sequence 1145 from Patent EP2074227 NA coding protein psRNATarget
JB163551.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:102   CAAUCCCACUCAAUCCACAUGGAU   125

2.5 Sequence 1215 from Patent EP2559767 NA coding protein psRNATarget
LQ235224.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:102   CAAUCCCACUCAAUCCACAUGGAU   125

2.5 Sequence 1219 from Patent EP2985353 NA coding protein psRNATarget
HI403094.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:102   CAAUCCCACUCAAUCCACAUGGAU   125

2.5 Sequence 1219 from Patent EP2074227 NA coding protein psRNATarget
HI403090.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:102   CAAUCCCACUCAAUCCACAUGGAU   125

2.5 Sequence 1215 from Patent EP2074227 NA coding protein psRNATarget
LQ235220.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:102   CAAUCCCACUCAAUCCACAUGGAU   125

2.5 Sequence 1215 from Patent EP2985353 NA coding protein psRNATarget
JB163555.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:102   CAAUCCCACUCAAUCCACAUGGAU   125

2.5 Sequence 1219 from Patent EP2559767 NA coding protein psRNATarget
EU942673.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:95   CAAUCCCACUCAAUCCACAUGGAU   118

2.5 Zea mays clone 1529344 mRNA sequence NA coding protein psRNATarget
EU951448.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:749   CAAUCCCACUCAAUCCACAUGGAU   772

2.5 Zea mays clone 701961 mRNA sequence NA coding protein psRNATarget
XM_020552889.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:878   CAAUCCCACUCAAUCCACAUGGAU   901

2.5 PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA NA coding protein psRNATarget
BT085319.2
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:180   CAAUCCCACUCAAUCCACAUGGAU   203

2.5 Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds NA coding protein psRNATarget
NM_001147844.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:1128   CAAUCCCACUCAAUCCACAUGGAU   1151

2.5 Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA NA coding protein psRNATarget
BT041052.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:1128   CAAUCCCACUCAAUCCACAUGGAU   1151

2.5 Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds NA coding protein psRNATarget
NM_001176594.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:1132   CAAUCCCGCUCAAUCCACAUGGAU   1155

2.5 Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA NA coding protein psRNATarget
BT068797.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:1132   CAAUCCCGCUCAAUCCACAUGGAU   1155

2.5 Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds NA coding protein psRNATarget
BT069115.2
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:532   CAAUCCCACUCAAUCCACAUGGAU   555

2.5 Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds NA coding protein psRNATarget
BT066987.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:1419   CAAUCCCACUCAAUCCACAUGGAU   1442

2.5 Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds NA coding protein psRNATarget
NM_001279968.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:1534   CAAUCCCACUCAAUCCACAUGGAU   1557

2.5 Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA NA coding protein psRNATarget
BT088232.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:1534   CAAUCCCACUCAAUCCACAUGGAU   1557

2.5 Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds NA coding protein psRNATarget
XM_008645912.2
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:1623   CAAUCCCGCUCAAUCCACAUGGAU   1646

2.5 PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA NA coding protein psRNATarget
EU955633.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:1819   CAAUCCCACUCAAUCCACAUGGAU   1842

2.5 Zea mays clone 1540038 transposon protein mRNA, complete cds NA coding protein psRNATarget
NM_001154031.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:1819   CAAUCCCACUCAAUCCACAUGGAU   1842

2.5 Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA NA coding protein psRNATarget
XM_020553538.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:1890   CAAUCCCGCUCAAUCCACAUGGAU   1913

2.5 PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008645867.2
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:1956   CAAUCCCGCUCAAUCCACAUGGAU   1979

2.5 PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008664276.2
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:2051   CAAUCCCGCUCAAUCCACAUGGAU   2074

2.5 PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X2, mRNA NA coding protein psRNATarget
BT018903.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:2033   CAAUCCCGCUCAAUCCACAUGGAU   2056

2.5 Zea mays clone EL01T0208C03.d mRNA sequence NA coding protein psRNATarget
XM_008664275.2
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:2144   CAAUCCCGCUCAAUCCACAUGGAU   2167

2.5 PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008661718.2
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:2215   CAAUCCCACUCAAUCCACAUGGAU   2238

2.5 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA NA coding protein psRNATarget
XM_008679547.2
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:2504   CAAUCCCACUCAAUCCACAUGGAU   2527

2.5 PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541449.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:2804   CAAUCCCGCUCAAUCCACAUGGAU   2827

2.5 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA NA coding protein psRNATarget
BT066874.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:1962   CAAUCCCACUCAAUCCACAUGGAU   1985

2.5 Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds NA coding protein psRNATarget
NM_001175969.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:1962   CAAUCCCACUCAAUCCACAUGGAU   1985

2.5 Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA NA coding protein psRNATarget
XM_020541448.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:2908   CAAUCCCGCUCAAUCCACAUGGAU   2931

2.5 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549843.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:1085   CAAUCCCACUCAAUCCACAUGGAU   1108

2.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020549841.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:1203   CAAUCCCACUCAAUCCACAUGGAU   1226

2.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549842.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:1203   CAAUCCCACUCAAUCCACAUGGAU   1226

2.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658241.2
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:1233   CAAUCCCACUCAAUCCACAUGGAU   1256

2.5 PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020545430.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:5808   CAAUCCCACUCAAUCCACAUGGAU   5831

2.5 PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA NA coding protein psRNATarget
XM_020539703.1
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  |||||||*||||||||*|||||||
targets:64   CAAUCCCGCUCAAUCCACAUGGAU   87

2.5 PREDICTED: Zea mays uncharacterized LOC109940256 (LOC109940256), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020550213.1
ncRNA:24   GUUAG-GGGGAGUUAGGGGUACCUA   1
  =|*||-|||||||||||||||||||
targets:3735   UAUUCUCCCCUCAAUCCCCAUGGAU   3759

2.0 PREDICTED: Zea mays protein FAM91A1-like (LOC103650099), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674377.2
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  =|*|=||=||||||||*|||||||
targets:3472   UAUUUCCUCUCAAUCCACAUGGAU   3495

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008674376.2
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  =|*|=||=||||||||*|||||||
targets:3485   UAUUUCCUCUCAAUCCACAUGGAU   3508

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674375.2
ncRNA:24   GUUAGGGGGAGUUAGGGGUACCUA   1
  =|*|=||=||||||||*|||||||
targets:3516   UAUUUCCUCUCAAUCCACAUGGAU   3539

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.