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BaseInfo

ncRNA ID novel_zma_miR3213
Species Zea mays
Class miRNA
Genome position Chr7:14390795-14390847 [-]
Reference genome RefGen_v4
Source SRR1583944
Length 20
Mature sequence(if miRNA) 1 - GUUUGGAUACUCUAGUAUUA - 20
Stem-loop(if miRNA) --           CA     AAAGCC
  AUACUGGAGUA  CAAAC      U
  |||||||||||  |||||      A
  UAUGAUCUCAU  GUUUG      A
AU           AG     AUCCAG
Stem-loop sequence AUACUGGAGUACACAAACAAAGCCUAAGACCUAGUUUGGAUACUCUAGUAUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ058886.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  ||||||||||||=|||||||
targets:309   UAAUACUAGAGUGUCCAAAC   328

1.5 TSA: Zea mays contig60008, mRNA sequence NA coding protein psRNATarget
EU960123.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|||||||||||||||||||
targets:1590   CAAUACUAGAGUAUCCAAAC   1609

0.0 Zea mays clone 221999 choline/ethanolamine kinase mRNA, complete cds NA coding protein psRNATarget
AY103846.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|||||||||||||||||||
targets:1010   CAAUACUAGAGUAUCCAAAC   1029

0.0 Zea mays PCO130752 mRNA sequence NA coding protein psRNATarget
BT019026.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|||||||||||||||||||
targets:964   CAAUACUAGAGUAUCCAAAC   983

0.0 Zea mays clone Contig531.F mRNA sequence NA coding protein psRNATarget
NM_001175915.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|||||||||||||||||||
targets:906   CAAUACUAGAGUAUCCAAAC   925

0.0 Zea mays U2 small nuclear ribonucleoprotein B'' (LOC100383254), mRNA NA coding protein psRNATarget
BT066687.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|||||||||||||||||||
targets:906   CAAUACUAGAGUAUCCAAAC   925

0.0 Zea mays full-length cDNA clone ZM_BFb0047M01 mRNA, complete cds NA coding protein psRNATarget
EU944570.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|||||||||||||||||||
targets:743   CAAUACUAGAGUAUCCAAAC   762

0.0 Zea mays clone 222723 mRNA sequence NA coding protein psRNATarget
LQ239375.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|||||||||||||||||||
targets:110   CAAUACUAGAGUAUCCAAAC   129

0.0 Sequence 5370 from Patent EP2985353 NA coding protein psRNATarget
HI407245.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|||||||||||||||||||
targets:110   CAAUACUAGAGUAUCCAAAC   129

0.0 Sequence 5370 from Patent EP2074227 NA coding protein psRNATarget
JB167706.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|||||||||||||||||||
targets:110   CAAUACUAGAGUAUCCAAAC   129

0.0 Sequence 5370 from Patent EP2559767 NA coding protein psRNATarget
XM_008646892.2
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||||||=||||
targets:3420   CAAUACUAGAGUAUCUAAAC   3439

1.5 PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008646891.2
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||||||=||||
targets:3325   CAAUACUAGAGUAUCUAAAC   3344

1.5 PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008646893.2
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||||||=||||
targets:3239   CAAUACUAGAGUAUCUAAAC   3258

1.5 PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020540884.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||||*||||||
targets:3951   CAAUACUAGAGUACCCAAAC   3970

1.5 PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109940748), mRNA NA coding protein psRNATarget
XM_008650840.2
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||||*||||||
targets:3428   CAAUACUAGAGUACCCAAAC   3447

1.5 PREDICTED: Zea mays two-component response regulator ORR24 (LOC103629724), mRNA NA coding protein psRNATarget
XM_008650840.2
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||=|||||||*||||||
targets:3546   CAAUAUUAGAGUACCCAAAC   3565

2.5 PREDICTED: Zea mays two-component response regulator ORR24 (LOC103629724), mRNA NA coding protein psRNATarget
XM_008659899.2
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|||||||||*|||||||||
targets:2164   CAAUACUAGAAUAUCCAAAC   2183

1.5 PREDICTED: Zea mays carotene epsilon-monooxygenase, chloroplastic (LOC103637620), mRNA NA coding protein psRNATarget
BT085111.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||||*||||||
targets:1227   AAAUACUAGAGUAACCAAAC   1246

1.5 Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds NA coding protein psRNATarget
XM_008674068.2
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|*|||||||||||||||||
targets:668   CAUUACUAGAGUAUCCAAAC   687

1.0 PREDICTED: Zea mays hypothetical protein (LOC100217088), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008648135.2
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||||*||||||
targets:1378   CAAUACUAGAGUACCCAAAC   1397

1.5 PREDICTED: Zea mays uncharacterized LOC103627823 (LOC103627823), mRNA NA coding protein psRNATarget
BT018215.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||||*||||||
targets:1421   CAAUACUAGAGUACCCAAAC   1440

1.5 Zea mays clone EL01N0561A07.c mRNA sequence NA coding protein psRNATarget
BT060604.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|*|||||||||||||||||
targets:601   CAUUACUAGAGUAUCCAAAC   620

1.0 Zea mays full-length cDNA clone ZM_BFb0022G03 mRNA, complete cds NA coding protein psRNATarget
NM_001322054.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||*||||||||
targets:1266   AAAUACUAGAGCAUCCAAAC   1285

1.5 Zea mays uncharacterized LOC107522024 (LOC107522024), mRNA NA coding protein psRNATarget
BT062975.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||*||||||||
targets:1266   AAAUACUAGAGCAUCCAAAC   1285

1.5 Zea mays full-length cDNA clone ZM_BFc0013H23 mRNA, complete cds NA coding protein psRNATarget
EU963259.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||*||||||||
targets:1090   CAAUACUAGAGCAUCCAAAC   1109

1.5 Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds NA coding protein psRNATarget
EU963469.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||||*||||||
targets:1009   CAAUACUAGAGUACCCAAAC   1028

1.5 Zea mays clone 263014 mRNA sequence NA coding protein psRNATarget
EU963895.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||||*||||||
targets:1016   CAAUACUAGAGUACCCAAAC   1035

1.5 Zea mays clone 273839 protein SFT2 mRNA, complete cds NA coding protein psRNATarget
BT085755.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||||*||||||
targets:919   CAAUACUAGAGUACCCAAAC   938

1.5 Zea mays full-length cDNA clone ZM_BFc0057I16 mRNA, complete cds NA coding protein psRNATarget
NM_001156128.2
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||||*||||||
targets:919   CAAUACUAGAGUACCCAAAC   938

1.5 Zea mays protein SFT2 (LOC100283226), mRNA NA coding protein psRNATarget
BT068211.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||*||||||||
targets:847   CAAUACUAGAGCAUCCAAAC   866

1.5 Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds NA coding protein psRNATarget
NM_001291617.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||*||||||||
targets:847   CAAUACUAGAGCAUCCAAAC   866

1.5 Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA NA coding protein psRNATarget
EU941642.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||||*||||||
targets:46   CAAUACUAGAGUACCCAAAC   65

1.5 Zea mays clone 1468727 mRNA sequence NA coding protein psRNATarget
LQ235407.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||||*||||||
targets:120   CAAUACUAGAGUACCCAAAC   139

1.5 Sequence 1402 from Patent EP2985353 NA coding protein psRNATarget
HI403277.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||||*||||||
targets:120   CAAUACUAGAGUACCCAAAC   139

1.5 Sequence 1402 from Patent EP2074227 NA coding protein psRNATarget
JB163738.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||||*||||||
targets:120   CAAUACUAGAGUACCCAAAC   139

1.5 Sequence 1402 from Patent EP2559767 NA coding protein psRNATarget
JB163953.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||||*||||||
targets:112   CAAUACUAGAGUACCCAAAC   131

1.5 Sequence 1617 from Patent EP2559767 NA coding protein psRNATarget
LQ235622.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||||*||||||
targets:112   CAAUACUAGAGUACCCAAAC   131

1.5 Sequence 1617 from Patent EP2985353 NA coding protein psRNATarget
HI403492.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||||*||||||
targets:112   CAAUACUAGAGUACCCAAAC   131

1.5 Sequence 1617 from Patent EP2074227 NA coding protein psRNATarget
LQ239362.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||||*||||||
targets:59   CAAUACUAGAGUACCCAAAC   78

1.5 Sequence 5357 from Patent EP2985353 NA coding protein psRNATarget
JB167693.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||||*||||||
targets:59   CAAUACUAGAGUACCCAAAC   78

1.5 Sequence 5357 from Patent EP2559767 NA coding protein psRNATarget
HI407232.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||||*||||||
targets:59   CAAUACUAGAGUACCCAAAC   78

1.5 Sequence 5357 from Patent EP2074227 NA coding protein psRNATarget
LQ235446.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||||*||||||
targets:49   CAAUACUAGAGUACCCAAAC   68

1.5 Sequence 1441 from Patent EP2985353 NA coding protein psRNATarget
HI403316.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||||*||||||
targets:49   CAAUACUAGAGUACCCAAAC   68

1.5 Sequence 1441 from Patent EP2074227 NA coding protein psRNATarget
JB163777.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||||||||||*||||||
targets:49   CAAUACUAGAGUACCCAAAC   68

1.5 Sequence 1441 from Patent EP2559767 NA coding protein psRNATarget
BT034601.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *=*|||||||||||||||||
targets:1975   CGUUACUAGAGUAUCCAAAC   1994

2.0 Zea mays full-length cDNA clone ZM_BFb0002L05 mRNA, complete cds NA coding protein psRNATarget
NM_001137799.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *=*|||||||||||||||||
targets:1975   CGUUACUAGAGUAUCCAAAC   1994

2.0 Zea mays putative protein kinase superfamily protein (LOC100192584), mRNA NA coding protein psRNATarget
BT067545.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *=*|||||||||||||||||
targets:1794   CGUUACUAGAGUAUCCAAAC   1813

2.0 Zea mays full-length cDNA clone ZM_BFc0086J10 mRNA, complete cds NA coding protein psRNATarget
XM_008674966.2
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|||||||*||||||||||=
targets:3321   AAAUACUAUAGUAUCCAAAU   3340

2.5 PREDICTED: Zea mays leunig-related1 (LOC100383414), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674967.2
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|||||||*||||||||||=
targets:3318   AAAUACUAUAGUAUCCAAAU   3337

2.5 PREDICTED: Zea mays leunig-related1 (LOC100383414), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674970.2
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|||||||*||||||||||=
targets:3289   AAAUACUAUAGUAUCCAAAU   3308

2.5 PREDICTED: Zea mays leunig-related1 (LOC100383414), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008674971.2
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|||||||*||||||||||=
targets:3285   AAAUACUAUAGUAUCCAAAU   3304

2.5 PREDICTED: Zea mays leunig-related1 (LOC100383414), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008674972.2
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|||||||*||||||||||=
targets:3250   AAAUACUAUAGUAUCCAAAU   3269

2.5 PREDICTED: Zea mays leunig-related1 (LOC100383414), transcript variant X8, mRNA NA coding protein psRNATarget
XM_008660568.2
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||=|||||||*||||||
targets:2799   AAAUAUUAGAGUACCCAAAC   2818

2.5 PREDICTED: Zea mays Putative SAP DNA-binding domain family protein isoform 1 (LOC100381870), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008674973.2
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|||||||*||||||||||=
targets:2855   AAAUACUAUAGUAUCCAAAU   2874

2.5 PREDICTED: Zea mays leunig-related1 (LOC100383414), transcript variant X10, mRNA NA coding protein psRNATarget
XM_008660567.2
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||=|||||||*||||||
targets:2771   AAAUAUUAGAGUACCCAAAC   2790

2.5 PREDICTED: Zea mays Putative SAP DNA-binding domain family protein isoform 1 (LOC100381870), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008660566.2
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||=|||||||*||||||
targets:2740   AAAUAUUAGAGUACCCAAAC   2759

2.5 PREDICTED: Zea mays Putative SAP DNA-binding domain family protein isoform 1 (LOC100381870), transcript variant X1, mRNA NA coding protein psRNATarget
BT062480.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||=|||||||*||||||
targets:1506   AAAUAUUAGAGUACCCAAAC   1525

2.5 Zea mays full-length cDNA clone ZM_BFb0303E20 mRNA, complete cds NA coding protein psRNATarget
NM_001174655.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||=|||||||*||||||
targets:1506   AAAUAUUAGAGUACCCAAAC   1525

2.5 Zea mays Putative SAP DNA-binding domain family protein isoform 1 (LOC100381870), mRNA NA coding protein psRNATarget
AY107149.2
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||=|||||||*||||||
targets:1334   AAAUAUUAGAGUACCCAAAC   1353

2.5 Zea mays PCO139446 mRNA sequence NA coding protein psRNATarget
EU328276.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||=|||||||*||||||
targets:976   AAAUAUUAGAGUACCCAAAC   995

2.5 Zea mays RFLP probe p-csu389 mRNA sequence NA coding protein psRNATarget
XM_020548227.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|||||*=||||||||||||
targets:828   GAAUACAGGAGUAUCCAAAC   847

2.5 PREDICTED: Zea mays DNA-directed RNA polymerase III subunit RPC9-like (LOC109943977), mRNA NA coding protein psRNATarget
XM_020548228.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|||||*=||||||||||||
targets:777   GAAUACAGGAGUAUCCAAAC   796

2.5 PREDICTED: Zea mays uncharacterized LOC109943978 (LOC109943978), mRNA NA coding protein psRNATarget
XM_020548226.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|||||*=||||||||||||
targets:750   GAAUACAGGAGUAUCCAAAC   769

2.5 PREDICTED: Zea mays uncharacterized LOC109939175 (LOC109939175), mRNA NA coding protein psRNATarget
BT069728.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||=|||||||*||||||
targets:391   AAAUAUUAGAGUACCCAAAC   410

2.5 Zea mays full-length cDNA clone ZM_BFb0212B11 mRNA, complete cds NA coding protein psRNATarget
EZ107838.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *||||=|||||||*||||||
targets:82   AAAUAUUAGAGUAACCAAAC   101

2.5 TSA: Zea mays contig43496, mRNA sequence NA coding protein psRNATarget
XM_008670998.2
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|*||||||||||*||||||
targets:10   CAUUACUAGAGUACCCAAAC   29

2.5 PREDICTED: Zea mays LETM1 and EF-hand domain-containing protein 1, mitochondrial (LOC103646271), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008677341.2
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|||||*|||||*|||||||
targets:2994   GAAUACGAGAGUUUCCAAAC   3013

2.5 PREDICTED: Zea mays cation/H(+) antiporter 15 (LOC103651657), mRNA NA coding protein psRNATarget
XM_020550625.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|||||*|||||*|||||||
targets:2978   GAAUACGAGAGUUUCCAAAC   2997

2.5 PREDICTED: Zea mays cation/H(+) antiporter 15-like (LOC109944899), mRNA NA coding protein psRNATarget
XM_020542702.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|*||||||||||*||||||
targets:88   CAUUACUAGAGUACCCAAAC   107

2.5 PREDICTED: Zea mays aldehyde dehydrogenase family 2 member C4 (LOC103637346), mRNA NA coding protein psRNATarget
XM_008666548.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|*||||||||||*||||||
targets:255   CAUUACUAGAGUACCCAAAC   274

2.5 PREDICTED: Zea mays uncharacterized LOC103643386 (LOC103643386), mRNA NA coding protein psRNATarget
XM_008681984.2
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|*|*|||||||||||||||
targets:1360   CAUUCCUAGAGUAUCCAAAC   1379

2.0 PREDICTED: Zea mays caleosin (LOC100285543), transcript variant X1, mRNA NA coding protein psRNATarget
EU968340.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|*||||||||||*||||||
targets:738   CACUACUAGAGUACCCAAAC   757

2.5 Zea mays clone 319179 mRNA sequence NA coding protein psRNATarget
EZ056559.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|*||||||||||*||||||
targets:18   CAUUACUAGAGUACCCAAAC   37

2.5 TSA: Zea mays contig57681, mRNA sequence NA coding protein psRNATarget
HI406570.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|*||||||||||*||||||
targets:114   CAUUACUAGAGUACCCAAAC   133

2.5 Sequence 4695 from Patent EP2074227 NA coding protein psRNATarget
LQ238700.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|*||||||||||*||||||
targets:114   CAUUACUAGAGUACCCAAAC   133

2.5 Sequence 4695 from Patent EP2985353 NA coding protein psRNATarget
JB167031.1
ncRNA:20   AUUAUGAUCUCAUAGGUUUG   1
  *|*||||||||||*||||||
targets:114   CAUUACUAGAGUACCCAAAC   133

2.5 Sequence 4695 from Patent EP2559767 NA coding protein psRNATarget
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