Search result

BaseInfo

ncRNA ID	novel_zma_miR3212
Species	Zea mays
Class	miRNA
Genome position	Chr4:196669438-196669523 [+]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	1 - GGGAUGGCACUCGGCAAAGAAGAU - 24
Stem-loop(if miRNA)	--              CAAA      -U               AC   GGGAUGGCACUCGG    GAAGAU  CUUUGCCGAGUGUCA  C   ||||||||||||||    ||||||  |||||||||||||||   UUCUACUGUGAGCC    UUUCUA  GAAACGGCUCACAGU  G GU              ---A      UC               CG
Stem-loop sequence	GGGAUGGCACUCGGCAAAGAAGAUUCUUUGCCGAGUGUCAACCGGCUGACACUCGGCAAAGCUAUCUUUACCGAGUGUCAUCUUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT067215.1	ncRNA:24   UAGAAGAAACGGCUCACGGUAGGG   1   *|**|||||||||||||=|||||* targets:1361   UUAGUCUUUGCCGAGUGUCAUCCG   1384 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
BT064046.1	ncRNA:24   UAGAAGAAACGGCUCACGGUAGGG   1   *|**|||||||||||||=|||||* targets:1498   UUAGUCUUUGCCGAGUGUCAUCCG   1521 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:24   UAGAAGAAACGGCUCACGGUAGGG   1   *|**|||||||||||||=|||||* targets:1498   UUAGUCUUUGCCGAGUGUCAUCCG   1521 Target Full Sequence	2.5	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
XM_020541472.1	ncRNA:24   UAGAAGAAACGGCUCACGGUAGGG   1   |****|||||||||||||||||=* targets:337   AAAGGCUUUGCCGAGUGCCAUCUG   360 Target Full Sequence	2.5	PREDICTED: Zea mays spidroin-1-like (LOC109941026), mRNA	NA	coding protein	psRNATarget