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BaseInfo

ncRNA ID	novel_zma_miR3207
Species	Zea mays
Class	miRNA
Genome position	Chr4:134443439-134443541 [+]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	80 - AAGUGUGGCAAGUUAGGUAGUAAA - 103
Stem-loop(if miRNA)	--UCG  G      G                 -----------------    AG   UU      UG CUAACU UGCCACACUUUGCCUAA                 GGUU  UCG  U      || |||||| |||||||||||||||||                 ||||  |||  G      AU GAUUGA ACGGUGUGAAACGGAUU                 UCAA  AGU  A AAAUG  G      -                 GAAAAGAAGGAUUAAAA    GA   UA
Stem-loop sequence	UCGUGGCUAACUGUGCCACACUUUGCCUAAGGUUAGUCGUUUGAAUUGAAGAACUAAAAUUAGGAAGAAAAGUUAGGCAAAGUGUGGCAAGUUAGGUAGUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU968686.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   ||*|||=||||||||||||||||| targets:618   UUCACUGCCUAACUUGCCACACUU   641 Target Full Sequence	1.0	Zea mays clone 323451 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT065161.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   ||*|||=||||||||||||||||| targets:601   UUCACUGCCUAACUUGCCACACUU   624 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0009L23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550436.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   ||*|||=||||||||||||||||| targets:636   UUCACUGCCUAACUUGCCACACUU   659 Target Full Sequence	1.0	PREDICTED: Zea mays 14 kDa zinc-binding protein-like (LOC100277449), mRNA	NA	coding protein	psRNATarget
LQ235522.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   ||*=||=||||||||||||||||| targets:14   UUCGCUGCCUAACUUGCCACACUU   37 Target Full Sequence	1.0	Sequence 1517 from Patent EP2985353	NA	coding protein	psRNATarget
JB163853.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   ||*=||=||||||||||||||||| targets:14   UUCGCUGCCUAACUUGCCACACUU   37 Target Full Sequence	1.0	Sequence 1517 from Patent EP2559767	NA	coding protein	psRNATarget
HI403392.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   ||*=||=||||||||||||||||| targets:14   UUCGCUGCCUAACUUGCCACACUU   37 Target Full Sequence	1.0	Sequence 1517 from Patent EP2074227	NA	coding protein	psRNATarget
BT033837.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   |||=*|=||||||||||||||||| targets:926   UUUGAUGCCUAACUUGCCACACUU   949 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0155O23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149797.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   ||*=||||||||||||=||||||| targets:928   UUCGCUACCUAACUUGUCACACUU   951 Target Full Sequence	1.5	Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
EU958119.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   ||*=||||||||||||=||||||| targets:928   UUCGCUACCUAACUUGUCACACUU   951 Target Full Sequence	1.5	Zea mays clone 1674247 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137099.2	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   |||=*|=||||||||||||||||| targets:1414   UUUGAUGCCUAACUUGCCACACUU   1437 Target Full Sequence	1.0	Zea mays KDEL-tailed cysteine endopeptidase CEP1 (cl903_-1), mRNA	NA	coding protein	psRNATarget
AY109437.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   |||=*|=||||||||||||||||| targets:1424   UUUGAUGCCUAACUUGCCACACUU   1447 Target Full Sequence	1.0	Zea mays CL903_-1 mRNA sequence	NA	coding protein	psRNATarget
XM_020540795.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   |||*||=||||||||||||||=|| targets:688   UUUCCUGCCUAACUUGCCACAUUU   711 Target Full Sequence	2.5	PREDICTED: Zea mays BTB/POZ domain-containing protein NPY1 (LOC103632767), transcript variant X3, mRNA	NA	coding protein	psRNATarget
LQ235416.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   ||*=||=|||||||||=||||||| targets:14   UUCGCUGCCUAACUUGUCACACUU   37 Target Full Sequence	2.5	Sequence 1411 from Patent EP2985353	NA	coding protein	psRNATarget
HI403286.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   ||*=||=|||||||||=||||||| targets:14   UUCGCUGCCUAACUUGUCACACUU   37 Target Full Sequence	2.5	Sequence 1411 from Patent EP2074227	NA	coding protein	psRNATarget
JB163747.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   ||*=||=|||||||||=||||||| targets:14   UUCGCUGCCUAACUUGUCACACUU   37 Target Full Sequence	2.5	Sequence 1411 from Patent EP2559767	NA	coding protein	psRNATarget
HI403292.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   ||*=||=|=||||||||||||||| targets:14   UUCGCUGCUUAACUUGCCACACUU   37 Target Full Sequence	2.0	Sequence 1417 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235422.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   ||*=||=|=||||||||||||||| targets:14   UUCGCUGCUUAACUUGCCACACUU   37 Target Full Sequence	2.0	Sequence 1417 from Patent EP2985353	NA	coding protein	psRNATarget
JB163753.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   ||*=||=|=||||||||||||||| targets:14   UUCGCUGCUUAACUUGCCACACUU   37 Target Full Sequence	2.0	Sequence 1417 from Patent EP2559767	NA	coding protein	psRNATarget
BT083952.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   |||=*|==|||||||||||||||| targets:1479   UUUGGUGUCUAACUUGCCACACUU   1502 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0057K24 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660020.2	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   |||=*|==|||||||||||||||| targets:3003   UUUGAUGUCUAACUUGCCACACUU   3026 Target Full Sequence	2.0	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660021.2	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   |||=*|==|||||||||||||||| targets:3131   UUUGAUGUCUAACUUGCCACACUU   3154 Target Full Sequence	2.0	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020543539.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   |||=*|==|||||||||||||||| targets:3138   UUUGAUGUCUAACUUGCCACACUU   3161 Target Full Sequence	2.0	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X6, mRNA	NA	coding protein	psRNATarget
BT018862.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   ||*|*|=||||||||||||||||| targets:1044   UUCAGUGCCUAACUUGCCACACUU   1067 Target Full Sequence	1.0	Zea mays clone EL01N0559E06.d mRNA sequence	NA	coding protein	psRNATarget
XM_008660313.2	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   |||=*|=*|||||||||||||||| targets:705   UUUGAUGGCUAACUUGCCACACUU   728 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008660311.2	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   |||=*|=*|||||||||||||||| targets:705   UUUGAUGGCUAACUUGCCACACUU   728 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660309.2	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   |||=*|=*|||||||||||||||| targets:705   UUUGAUGGCUAACUUGCCACACUU   728 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670840.2	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   |||=*|=*|||||||||||||||| targets:2670   UUUGAUGGCUAACUUGCCACACUU   2693 Target Full Sequence	2.0	PREDICTED: Zea mays ARM repeat superfamily protein (LOC103646122), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ066409.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   *||*||=|||||*||||||||||| targets:2   GUUCCUGCCUAAGUUGCCACACUU   25 Target Full Sequence	2.5	TSA: Zea mays contig02043, mRNA sequence	NA	coding protein	psRNATarget
BT064583.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   ||*|||||||*|*||||||||||| targets:1642   UUCACUACCUCAGUUGCCACACUU   1665 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0185L15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150092.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   ||*|||||||*|*||||||||||| targets:1712   UUCACUACCUCAGUUGCCACACUU   1735 Target Full Sequence	2.5	Zea mays uncharacterized LOC100276261 (LOC100276261), mRNA	NA	coding protein	psRNATarget
EU960971.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   ||*|||||||*|*||||||||||| targets:1712   UUCACUACCUCAGUUGCCACACUU   1735 Target Full Sequence	2.5	Zea mays clone 230073 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
AY109434.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   *|||-|=|||||*||||||||||| targets:395   GUUA-UGCCUAAGUUGCCACACUU   417 Target Full Sequence	2.5	Zea mays CL2997_-2 mRNA sequence	NA	coding protein	psRNATarget
XM_020543351.1	ncRNA:24   AAAU-----GAUGGAUUGAACGGUGUGAA   1   |||=-----||||||*|*||||||||||| targets:788   UUUGGUUGCCUACCUCAAUUGCCACACUU   816 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109941998 (LOC109941998), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020545710.1	ncRNA:24   AAAUGAUGGAUUGAACGGUGUGAA   1   ||*==|||||*|*||||||||||| targets:2572   UUCGUUACCUCAAUUGCCACACUU   2595 Target Full Sequence	2.5	PREDICTED: Zea mays CRM-domain containing factor CFM3, chloroplastic/mitochondrial (LOC103642614), mRNA	NA	coding protein	psRNATarget