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BaseInfo

ncRNA ID	novel_zma_miR3206
Species	Zea mays
Class	miRNA
Genome position	Chr3:8458967-8459032 [+]
Reference genome	RefGen_v4
Source	SRR2089715;SRR2089698;SRR2089707;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - GUUCUUUUUUAUUUGUCGUCGUUU - 24
Stem-loop(if miRNA)	--      UUU           G       AAA   GUUCUU   UAUUUGUCGUC UUUAGUU   A   ||||||   ||||||||||| |||||||   CAAGAG   AUAAACAGCAG GGAUUAA   A GG      CUU           A       AUA
Stem-loop sequence	GUUCUUUUUUAUUUGUCGUCGUUUAGUUAAAAAAUAAAUUAGGAGACGACAAAUAUUCGAGAACGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT083888.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |||||=|||||||||||||||||| targets:1154   AAACGGCGACAAAUAAAAAAGAAC   1177 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0051D08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001177150.2	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |||||=|||||||||||||||||| targets:1305   AAACGGCGACAAAUAAAAAAGAAC   1328 Target Full Sequence	1.0	Zea mays hypothetical protein (umc1687), mRNA	NA	coding protein	psRNATarget
NM_001148677.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |||||=|||||||||||||||||| targets:1322   AAACGGCGACAAAUAAAAAAGAAC   1345 Target Full Sequence	1.0	Zea mays hypothetical protein (umc1687), mRNA	NA	coding protein	psRNATarget
BT042757.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |||||=|||||||||||||||||| targets:1322   AAACGGCGACAAAUAAAAAAGAAC   1345 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0037D18 mRNA, complete cds	NA	coding protein	psRNATarget
EZ066467.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*||||||||||||||||||| targets:33   AAACCACGACAAAUAAAAAAGAAC   56 Target Full Sequence	0.0	TSA: Zea mays contig02101, mRNA sequence	NA	coding protein	psRNATarget
EZ079530.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*||||=|||||||||||||| targets:103   AAACCACGAUAAAUAAAAAAGAAC   126 Target Full Sequence	1.0	TSA: Zea mays contig15169, mRNA sequence	NA	coding protein	psRNATarget
EZ062630.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*=|||||||||||||||||| targets:93   AAACCGCGACAAAUAAAAAAGAAC   116 Target Full Sequence	1.0	TSA: Zea mays contig63752, mRNA sequence	NA	coding protein	psRNATarget
EU949554.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*=|||||||||||||||||| targets:447   AAACAGCGACAAAUAAAAAAGAAC   470 Target Full Sequence	1.0	Zea mays clone 424261 mRNA sequence	NA	coding protein	psRNATarget
EZ113277.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*=|||||||||||||||||| targets:627   AAACAGCGACAAAUAAAAAAGAAC   650 Target Full Sequence	1.0	TSA: Zea mays contig48938, mRNA sequence	NA	coding protein	psRNATarget
AY109049.2	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*=|||||||||||||||||| targets:500   AAACAGCGACAAAUAAAAAAGAAC   523 Target Full Sequence	1.0	Zea mays PCO094720 mRNA sequence	NA	coding protein	psRNATarget
EU966650.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |||||||*|=|||||||||||||| targets:801   AAACGACCAUAAAUAAAAAAGAAC   824 Target Full Sequence	2.0	Zea mays clone 295924 peptide methionine sulfoxide reductase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156880.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |||||||*|=|||||||||||||| targets:801   AAACGACCAUAAAUAAAAAAGAAC   824 Target Full Sequence	2.0	Zea mays peptide methionine sulfoxide reductase (LOC100283982), mRNA	NA	coding protein	psRNATarget
EU952914.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||-||||||||||||||||||| targets:1024   AAAC-ACGACAAAUAAAAAAGAAC   1046 Target Full Sequence	0.0	Zea mays clone 1357151 mRNA sequence	NA	coding protein	psRNATarget
BT017193.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*=|||||||||||||||||| targets:1002   AAACCGCGACAAAUAAAAAAGAAC   1025 Target Full Sequence	1.0	Zea mays clone EL01N0371C09.c mRNA sequence	NA	coding protein	psRNATarget
EU965353.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*=|||||||||||||||||| targets:1070   AAACCGCGACAAAUAAAAAAGAAC   1093 Target Full Sequence	1.0	Zea mays clone 285514 CAPIP1 mRNA, complete cds	NA	coding protein	psRNATarget
BT040068.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*=|||||||||||||||||| targets:965   AAACCGCGACAAAUAAAAAAGAAC   988 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0063E17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147497.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*=|||||||||||||||||| targets:965   AAACCGCGACAAAUAAAAAAGAAC   988 Target Full Sequence	1.0	Zea mays CAPIP1 (LOC100273048), mRNA	NA	coding protein	psRNATarget
BT042256.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*||||||||||||||||||= targets:895   AAACCACGACAAAUAAAAAAGAAU   918 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0181G14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001352895.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||-||||||||||||||||||| targets:1617   AAAC-ACGACAAAUAAAAAAGAAC   1639 Target Full Sequence	0.0	Zea mays homeobox-leucine zipper protein HOX23 (LOC103626227), mRNA	NA	coding protein	psRNATarget
BT068579.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*=|||||||||||||||||| targets:1489   AAACAGCGACAAAUAAAAAAGAAC   1512 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0339J04 mRNA, complete cds	NA	coding protein	psRNATarget
BT034355.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*=|||||||||||||||||| targets:1586   AAACAGCGACAAAUAAAAAAGAAC   1609 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0007D11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001347903.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*=|||||||||||||||||| targets:1653   AAACAGCGACAAAUAAAAAAGAAC   1676 Target Full Sequence	1.0	Zea mays Sulfoquinovosyl transferase SQD2 (pco094720a), mRNA	NA	coding protein	psRNATarget
BT068416.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*=|||||||||||||||||| targets:1653   AAACAGCGACAAAUAAAAAAGAAC   1676 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0181F19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008652607.2	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*=|||||||||||||||||| targets:1697   AAACAGCGACAAAUAAAAAAGAAC   1720 Target Full Sequence	1.0	PREDICTED: Zea mays Sulfoquinovosyl transferase SQD2 (pco094720a), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT061377.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*=|||||||||||||||||| targets:1740   AAACAGCGACAAAUAAAAAAGAAC   1763 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0140P11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676081.2	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||-||||||||||||||||||| targets:2539   AAAC-ACGACAAAUAAAAAAGAAC   2561 Target Full Sequence	0.0	PREDICTED: Zea mays WPP domain-associated protein (LOC103650495), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676082.2	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||-||||||||||||||||||| targets:2543   AAAC-ACGACAAAUAAAAAAGAAC   2565 Target Full Sequence	0.0	PREDICTED: Zea mays WPP domain-associated protein (LOC103650495), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546478.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||*||=|||||||||||||||||| targets:2969   AAUCGGCGACAAAUAAAAAAGAAC   2992 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100194233 (LOC100194233), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546479.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||*||=|||||||||||||||||| targets:2969   AAUCGGCGACAAAUAAAAAAGAAC   2992 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100194233 (LOC100194233), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544837.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||-||||||||||||||||||| targets:3720   AAAC-ACGACAAAUAAAAAAGAAC   3742 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103630305 (LOC103630305), mRNA	NA	coding protein	psRNATarget
EU968685.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*=||||||||||||||||=| targets:484   AAACCGCGACAAAUAAAAAAGAGC   507 Target Full Sequence	2.5	Zea mays clone 323448 h/ACA ribonucleoprotein complex subunit 3-like protein mRNA, complete cds	NA	coding protein	psRNATarget
EU963041.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*=||||||||||||||||=| targets:472   AAACCGCGACAAAUAAAAAAGAGC   495 Target Full Sequence	2.5	Zea mays clone 256747 h/ACA ribonucleoprotein complex subunit 3-like protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547048.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*==||||||||||||||||| targets:721   AAACCGUGACAAAUAAAAAAGAAC   744 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC109939209 (LOC109939209), mRNA	NA	coding protein	psRNATarget
EU950009.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||-||||=|||||||||||||| targets:815   AAAC-ACGAUAAAUAAAAAAGAAC   837 Target Full Sequence	1.0	Zea mays clone 457222 mRNA sequence	NA	coding protein	psRNATarget
EU968574.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*==||||||||||||||||| targets:973   AAACCGUGACAAAUAAAAAAGAAC   996 Target Full Sequence	2.0	Zea mays clone 322400 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT037645.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*==||||||||||||||||| targets:1081   AAACCGUGACAAAUAAAAAAGAAC   1104 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0185K20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143322.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*==||||||||||||||||| targets:1081   AAACCGUGACAAAUAAAAAAGAAC   1104 Target Full Sequence	2.0	Zea mays uncharacterized LOC100216939 (LOC100216939), mRNA	NA	coding protein	psRNATarget
NM_001157392.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*=||||||||||||||||=| targets:1294   AAACCGCGACAAAUAAAAAAGAGC   1317 Target Full Sequence	2.5	Zea mays h/ACA ribonucleoprotein complex subunit 3-like protein (LOC100284497), mRNA	NA	coding protein	psRNATarget
EU968577.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*=||||||||||||||||=| targets:1294   AAACCGCGACAAAUAAAAAAGAGC   1317 Target Full Sequence	2.5	Zea mays clone 322423 h/ACA ribonucleoprotein complex subunit 3-like protein mRNA, complete cds	NA	coding protein	psRNATarget
BT038580.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||=|*=|||||||||||||||||| targets:1382   AAGCCGCGACAAAUAAAAAAGAAC   1405 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0295B07 mRNA, complete cds	NA	coding protein	psRNATarget
EU965454.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||=|*=|||||||||||||||||| targets:1408   AAGCCGCGACAAAUAAAAAAGAAC   1431 Target Full Sequence	1.0	Zea mays clone 286145 nucleic acid binding protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156559.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||=|*=|||||||||||||||||| targets:1408   AAGCCGCGACAAAUAAAAAAGAAC   1431 Target Full Sequence	1.0	Zea mays nucleic acid binding protein (LOC100283658), mRNA	NA	coding protein	psRNATarget
EU940900.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*==||||||||||||||||| targets:1285   AAACCGUGACAAAUAAAAAAGAAC   1308 Target Full Sequence	2.0	Zea mays clone 1168188 mRNA sequence	NA	coding protein	psRNATarget
XM_008678534.2	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||-||||=|||||||||||||| targets:1368   AAAC-ACGAUAAAUAAAAAAGAAC   1390 Target Full Sequence	1.0	PREDICTED: Zea mays secondary wall NAC transcription factor 2 (NAC115), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001157753.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |=||*=|||||||||||||||||| targets:1567   AGACCGCGACAAAUAAAAAAGAAC   1590 Target Full Sequence	1.0	Zea mays signal peptide peptidase-like 3 (LOC100284858), mRNA	NA	coding protein	psRNATarget
EU969922.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |=||*=|||||||||||||||||| targets:1567   AGACCGCGACAAAUAAAAAAGAAC   1590 Target Full Sequence	1.0	Zea mays clone 337285 signal peptide peptidase-like 3 mRNA, complete cds	NA	coding protein	psRNATarget
BT035140.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||-||||=|||||||||||||| targets:1796   AAAC-ACGAUAAAUAAAAAAGAAC   1818 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0042B01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138169.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||-||||=|||||||||||||| targets:1796   AAAC-ACGAUAAAUAAAAAAGAAC   1818 Target Full Sequence	1.0	Zea mays Mitochondrial ATP synthase D chain-related protein (LOC100192998), mRNA	NA	coding protein	psRNATarget
BT039113.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||-||||=|||||||||||||| targets:1553   AAAC-ACGAUAAAUAAAAAAGAAC   1575 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0371D07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147110.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||-||||=|||||||||||||| targets:1553   AAAC-ACGAUAAAUAAAAAAGAAC   1575 Target Full Sequence	1.0	Zea mays secondary wall NAC transcription factor 2 (NAC115), mRNA	NA	coding protein	psRNATarget
XM_008647454.2	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||-||||=|||||||||||||| targets:1811   AAAC-ACGAUAAAUAAAAAAGAAC   1833 Target Full Sequence	1.0	PREDICTED: Zea mays Mitochondrial ATP synthase D chain-related protein (LOC100192998), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020539257.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||-||||=|||||||||||||| targets:1877   AAAC-ACGAUAAAUAAAAAAGAAC   1899 Target Full Sequence	1.0	PREDICTED: Zea mays Mitochondrial ATP synthase D chain-related protein (LOC100192998), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008647374.2	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||-||||=|||||||||||||| targets:1901   AAAC-ACGAUAAAUAAAAAAGAAC   1923 Target Full Sequence	1.0	PREDICTED: Zea mays Mitochondrial ATP synthase D chain-related protein (LOC100192998), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008647327.2	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||-||||=|||||||||||||| targets:1913   AAAC-ACGAUAAAUAAAAAAGAAC   1935 Target Full Sequence	1.0	PREDICTED: Zea mays Mitochondrial ATP synthase D chain-related protein (LOC100192998), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008680960.2	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |=||*=|||||||||||||||||| targets:1947   AGACCGCGACAAAUAAAAAAGAAC   1970 Target Full Sequence	1.0	PREDICTED: Zea mays signal peptide peptidase-like 3 (LOC100284858), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008680966.2	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |=||*=|||||||||||||||||| targets:1935   AGACCGCGACAAAUAAAAAAGAAC   1958 Target Full Sequence	1.0	PREDICTED: Zea mays signal peptide peptidase-like 3 (LOC100284858), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT086185.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |=||*=|||||||||||||||||| targets:1935   AGACCGCGACAAAUAAAAAAGAAC   1958 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0127I09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680954.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |=||*=|||||||||||||||||| targets:1946   AGACCGCGACAAAUAAAAAAGAAC   1969 Target Full Sequence	1.0	PREDICTED: Zea mays signal peptide peptidase-like 3 (LOC100284858), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008680972.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |=||*=|||||||||||||||||| targets:1994   AGACCGCGACAAAUAAAAAAGAAC   2017 Target Full Sequence	1.0	PREDICTED: Zea mays signal peptide peptidase-like 3 (LOC100284858), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008665300.2	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*==||||||||||||||||| targets:2119   AAACCGUGACAAAUAAAAAAGAAC   2142 Target Full Sequence	2.0	PREDICTED: Zea mays trichohyalin-like (LOC103641991), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008665299.2	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*==||||||||||||||||| targets:2131   AAACCGUGACAAAUAAAAAAGAAC   2154 Target Full Sequence	2.0	PREDICTED: Zea mays trichohyalin-like (LOC103641991), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008665301.2	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*==||||||||||||||||| targets:2184   AAACCGUGACAAAUAAAAAAGAAC   2207 Target Full Sequence	2.0	PREDICTED: Zea mays trichohyalin-like (LOC103641991), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ051209.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |=||*=|||=|||||||||||||| targets:40   AGACCGCGAUAAAUAAAAAAGAAC   63 Target Full Sequence	2.0	TSA: Zea mays contig52329, mRNA sequence	NA	coding protein	psRNATarget
NM_001156209.2	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |||=*=||=||||||||||||||| targets:687   AAAUUGCGGCAAAUAAAAAAGAAC   710 Target Full Sequence	2.0	Zea mays TOM2B (LOC100283307), mRNA	NA	coding protein	psRNATarget
EU964222.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |||=*=||=||||||||||||||| targets:688   AAAUUGCGGCAAAUAAAAAAGAAC   711 Target Full Sequence	2.0	Zea mays clone 277065 TOM2B mRNA, complete cds	NA	coding protein	psRNATarget
BT060705.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||-|=|=||||||||||||||| targets:471   AAAC-AUGGCAAAUAAAAAAGAAC   493 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0036D24 mRNA, complete cds	NA	coding protein	psRNATarget
BT016321.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |||=*=||=||||||||||||||| targets:1461   AAAUUGCGGCAAAUAAAAAAGAAC   1484 Target Full Sequence	2.0	Zea mays clone Contig154 mRNA sequence	NA	coding protein	psRNATarget
EU940941.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |=||*=|||=|||||||||||||| targets:1777   AGACCGCGAUAAAUAAAAAAGAAC   1800 Target Full Sequence	2.0	Zea mays clone 1218400 mRNA sequence	NA	coding protein	psRNATarget
EU954561.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |=||*=|||=|||||||||||||| targets:2204   AGACCGCGAUAAAUAAAAAAGAAC   2227 Target Full Sequence	2.0	Zea mays clone 1470172 regulatory subunit mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153830.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |=||*=|||=|||||||||||||| targets:2204   AGACCGCGAUAAAUAAAAAAGAAC   2227 Target Full Sequence	2.0	Zea mays regulatory subunit (LOC100280910), mRNA	NA	coding protein	psRNATarget
XM_008645362.2	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |=||*=|||=|||||||||||||| targets:2275   AGACCGCGAUAAAUAAAAAAGAAC   2298 Target Full Sequence	2.0	PREDICTED: Zea mays regulatory subunit (LOC100280910), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645361.2	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |=||*=|||=|||||||||||||| targets:2293   AGACCGCGAUAAAUAAAAAAGAAC   2316 Target Full Sequence	2.0	PREDICTED: Zea mays regulatory subunit (LOC100280910), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008668992.2	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||-|=||=|||||||||||||| targets:1123   AAAC-AUGAUAAAUAAAAAAGAAC   1145 Target Full Sequence	2.0	PREDICTED: Zea mays SPX domain-containing membrane protein (cl35113_1), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020547411.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||-|=||=|||||||||||||| targets:1432   AAAC-AUGAUAAAUAAAAAAGAAC   1454 Target Full Sequence	2.0	PREDICTED: Zea mays SPX domain-containing membrane protein (cl35113_1), transcript variant X9, mRNA	NA	coding protein	psRNATarget
BT054648.2	ncRNA:24   UUUG---CUGCUGUUUAUUUUUUCUUG   1   *||=---|=|||||||||||||||||| targets:94   UAAUAUAGGCGACAAAUAAAAAAGAAC   120 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0028L02 mRNA, complete cds	NA	coding protein	psRNATarget
BT086021.2	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||-|||||||||||||||||=* targets:1344   AAAC-ACGACAAAUAAAAAAGAGA   1366 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0100K12 mRNA, complete cds	NA	coding protein	psRNATarget
EZ084539.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||-||||*|||||||||||||| targets:68   AAAC-ACGAGAAAUAAAAAAGAAC   90 Target Full Sequence	1.0	TSA: Zea mays contig20183, mRNA sequence	NA	coding protein	psRNATarget
XM_020546921.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||-|||||||||||||||||*| targets:5884   AAAC-ACGACAAAUAAAAAAGACC   5906 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943544 (LOC109943544), mRNA	NA	coding protein	psRNATarget
EU950207.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   **||*=|||||||||||||||||| targets:64   CUACCGCGACAAAUAAAAAAGAAC   87 Target Full Sequence	1.0	Zea mays clone 469419 mRNA sequence	NA	coding protein	psRNATarget
NM_001158185.2	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   *|||-||||=|||||||||||||= targets:1600   CAAC-ACGAUAAAUAAAAAAGAAU   1622 Target Full Sequence	2.0	Zea mays transparent testa 12 protein (LOC100285292), mRNA	NA	coding protein	psRNATarget
BT040575.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   *|||-||||=|||||||||||||= targets:1600   CAAC-ACGAUAAAUAAAAAAGAAU   1622 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0101D24 mRNA, complete cds	NA	coding protein	psRNATarget
EU971580.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   *|||-||||=|||||||||||||= targets:1862   CAAC-ACGAUAAAUAAAAAAGAAU   1884 Target Full Sequence	2.0	Zea mays clone 367538 transparent testa 12 protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546074.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |||=-|||==|||||||||||||= targets:1066   AAAU-ACGGUAAAUAAAAAAGAAU   1088 Target Full Sequence	3.0	PREDICTED: Zea mays fatty acid amide hydrolase-like (LOC109943165), mRNA	NA	coding protein	psRNATarget
EU966969.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |||=*=|*|||||||||||||||| targets:1095   AAAUCGCAACAAAUAAAAAAGAAC   1118 Target Full Sequence	2.0	Zea mays clone 298544 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150789.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |||=*=|*|||||||||||||||| targets:1095   AAAUCGCAACAAAUAAAAAAGAAC   1118 Target Full Sequence	2.0	Zea mays uncharacterized LOC100277135 (LOC100277135), mRNA	NA	coding protein	psRNATarget
BT060531.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||||*==*|||||||||||||||| targets:460   AAACCGUAACAAAUAAAAAAGAAC   483 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0012H17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547870.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||=|-||*|||||||||||||||| targets:52   AAGC-ACAACAAAUAAAAAAGAAC   74 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100382937 (LOC100382937), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547869.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   ||=|-||*|||||||||||||||| targets:57   AAGC-ACAACAAAUAAAAAAGAAC   79 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100382937 (LOC100382937), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ052868.1	ncRNA:24   UUUGCUGCUGUUUAUUUUUUCUUG   1   |||=-|||*||||||||||||||= targets:1002   AAAU-ACGUCAAAUAAAAAAGAAU   1024 Target Full Sequence	2.0	TSA: Zea mays contig53989, mRNA sequence	NA	coding protein	psRNATarget