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BaseInfo

ncRNA ID novel_zma_miR3199
Species Zea mays
Class miRNA
Genome position Chr7:32070418-32070540 [+]
Reference genome RefGen_v4
Source SRR1583944
Length 23
Mature sequence(if miRNA) 1 - CCGUCACUAGAAAUCGUAUUUCU - 23
Stem-loop(if miRNA) --  GU   U                         C           C   UG        
  CC  CAC AGAAAUCGUAUUUCUAUAGGCGGUU CUUAAGAAAAC GCU  UAAAAAUUC
  ||  ||| ||||||||||||||||||||||||| ||||||||||| |||  ||||||||A
  GG  GUG UCUUUAGCAUAAAGAUGUCUGCCGA GAAUUCUUUUG CGG  AUUUUUAGU
UU  UG   U                         U           A   UG        
Stem-loop sequence CCGUCACUAGAAAUCGUAUUUCUAUAGGCGGUUCCUUAAGAAAACCGCUUGUAAAAAUUCAUGAUUUUUAGUGGCAGUUUUCUUAAGUAGCCGUCUGUAGAAAUACGAUUUCUUGUGGUGGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235215.1
ncRNA:23   UCUUUAUGCUAAAGAUCACUGCC   1
  |||||||=|||||||||||*|||
targets:73   AGAAAUAUGAUUUCUAGUGUCGG   95

2.5 Sequence 1210 from Patent EP2985353 NA coding protein psRNATarget
JB163546.1
ncRNA:23   UCUUUAUGCUAAAGAUCACUGCC   1
  |||||||=|||||||||||*|||
targets:73   AGAAAUAUGAUUUCUAGUGUCGG   95

2.5 Sequence 1210 from Patent EP2559767 NA coding protein psRNATarget
HI403085.1
ncRNA:23   UCUUUAUGCUAAAGAUCACUGCC   1
  |||||||=|||||||||||*|||
targets:73   AGAAAUAUGAUUUCUAGUGUCGG   95

2.5 Sequence 1210 from Patent EP2074227 NA coding protein psRNATarget