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BaseInfo

ncRNA ID	novel_zma_miR3196
Species	Zea mays
Class	miRNA
Genome position	Chr3:90478827-90478920 [-]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	71 - AAAACCGGAUGGGAUUGGAGGGGC - 94
Stem-loop(if miRNA)	--AAA      UG            C       C CUC        A      ACCGGA  GGAUUGGAGGGG UAAAAUC C   CUUAUUCA U      ||||||  |||||||||||| ||||||| |   ||||||||      UGGUCU  CCUAACCUCCCC AUUUUAG G   GAGUAAGU U AUUUA      CA            A       A AAA        U
Stem-loop sequence	AAAACCGGAUGGGAUUGGAGGGGCUAAAAUCCCCUCCUUAUUCAAUUUUGAAUGAGAAAGAGAUUUUAACCCCUCCAAUCCACUCUGGUAUUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654495.2	ncRNA:24   CGGGGAGGUUAGGGUAGGCCAAAA   1   ||||||=|||||||*||||||||| targets:1115   GCCCCUUCAAUCCCCUCCGGUUUU   1138 Target Full Sequence	2.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
XM_008651246.2	ncRNA:24   CGGGGAGGUUAGGGUAGGCCAAAA   1   |||=|||=||||||||*||||||| targets:2343   GCCUCUCUAAUCCCAUGCGGUUUU   2366 Target Full Sequence	2.5	PREDICTED: Zea mays phosphoribosylaminoimidazole carboxylase, chloroplastic (LOC103630165), mRNA	NA	coding protein	psRNATarget
EZ066710.1	ncRNA:24   CGGGGAGGUUAGGGUAGGCCAAAA   1   |===||||||||||*||||||||| targets:62   GUUUCUCCAAUCCCUUCCGGUUUU   85 Target Full Sequence	1.5	TSA: Zea mays contig02344, mRNA sequence	NA	coding protein	psRNATarget
BT065189.1	ncRNA:24   CGGGGAGGUUAGGGUAGGCCAAAA   1   |===||||||||||*||||||||| targets:935   GUUUCUCCAAUCCCUUCCGGUUUU   958 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0026F18 mRNA, complete cds	NA	coding protein	psRNATarget
EU965698.1	ncRNA:24   CGGGGAGGUUAGGGUAGGCCAAAA   1   |===||||||||||*||||||||| targets:1056   GUUUCUCCAAUCCCUUCCGGUUUU   1079 Target Full Sequence	1.5	Zea mays clone 288085 nuclear cap-binding protein subunit 2 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156624.1	ncRNA:24   CGGGGAGGUUAGGGUAGGCCAAAA   1   |===||||||||||*||||||||| targets:1056   GUUUCUCCAAUCCCUUCCGGUUUU   1079 Target Full Sequence	1.5	Zea mays uncharacterized LOC100283725 (gpm911), mRNA	NA	coding protein	psRNATarget
XM_020553374.1	ncRNA:24   CGGGGAGGUUAGGGUAGGCCAAAA   1   |===||||||||||*||||||||| targets:1263   GUUUCUCCAAUCCCUUCCGGUUUU   1286 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100283725 (gpm911), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672150.2	ncRNA:24   CGGGGAGGUUAGGGUAGGCCAAAA   1   *|||*|||=||||*|||||||||| targets:144   UCCCGUCCGAUCCAAUCCGGUUUU   167 Target Full Sequence	2.5	PREDICTED: Zea mays putative E3 ubiquitin-protein ligase RF298 (LOC103647645), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008672149.2	ncRNA:24   CGGGGAGGUUAGGGUAGGCCAAAA   1   *|||*|||=||||*|||||||||| targets:276   UCCCGUCCGAUCCAAUCCGGUUUU   299 Target Full Sequence	2.5	PREDICTED: Zea mays putative E3 ubiquitin-protein ligase RF298 (LOC103647645), transcript variant X1, mRNA	NA	coding protein	psRNATarget