Search result

BaseInfo

ncRNA ID	novel_zma_miR3195
Species	Zea mays
Class	miRNA
Genome position	Chr3:94403870-94403931 [-]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	39 - AGGAUUGAAGGGGAUUGAUGGGGA - 62
Stem-loop(if miRNA)	--       A          U        UA   AGGAUUG AGGGGAUUGA GGGGAAAU  G   ||||||| |||||||||| ||||||||   UCCUAAC UCUCCUAACU CCCCUUUA  U UC       C          C        UU
Stem-loop sequence	AGGAUUGAAGGGGAUUGAUGGGGAAAUUAGUUUAUUUCCCCCUCAAUCCUCUCCAAUCCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB170124.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||||*|=|||||||||||||||| targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90 Target Full Sequence	2.0	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||||*|=|||||||||||||||| targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90 Target Full Sequence	2.0	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||||*|=|||||||||||||||| targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90 Target Full Sequence	2.0	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||||*|=|||||||||||||||| targets:821   UCCCCCUUAAUCCCCUUCAAUCCU   844 Target Full Sequence	2.0	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||||*|=|||||||||||||||| targets:860   UCCCCCUUAAUCCCCUUCAAUCCU   883 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||||*|=|||||||||||||||| targets:865   UCCCCCUUAAUCCCCUUCAAUCCU   888 Target Full Sequence	2.0	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||||*|=|||||||||||||||| targets:865   UCCCCCUUAAUCCCCUUCAAUCCU   888 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
JB163452.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   ||=||*|||||||||||||||||* targets:84   UCUCCCUCAAUCCCCUUCAAUCCA   107 Target Full Sequence	2.0	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235121.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   ||=||*|||||||||||||||||* targets:84   UCUCCCUCAAUCCCCUUCAAUCCA   107 Target Full Sequence	2.0	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
HI402991.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   ||=||*|||||||||||||||||* targets:84   UCUCCCUCAAUCCCCUUCAAUCCA   107 Target Full Sequence	2.0	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||*=||||||||||||||||||* targets:1415   UCCGUAUCAAUCCCCUUCAAUCCA   1438 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||*=||||||||||||||||||* targets:1459   UCCGUAUCAAUCCCCUUCAAUCCA   1482 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
BT069589.2	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||=||*||||||||||||||||* targets:1023   UCCUCACCAAUCCCCUUCAAUCCA   1046 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0174I14 mRNA, complete cds	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||*=||||||||||||||||||* targets:1477   UCCGUAUCAAUCCCCUUCAAUCCA   1500 Target Full Sequence	1.0	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||*=||||||||||||||||||* targets:1491   UCCGUAUCAAUCCCCUUCAAUCCA   1514 Target Full Sequence	1.0	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||*=||||||||||||||||||* targets:1491   UCCGUAUCAAUCCCCUUCAAUCCA   1514 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||*=||||||||||||||||||* targets:970   UCCGUAUCAAUCCCCUUCAAUCCA   993 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
JB163954.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||||*||||||||||*||||||| targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	2.5	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||||*||||||||||*||||||| targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	2.5	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
HI403493.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||||*||||||||||*||||||| targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	2.5	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||*=|||=||||||||||||||* targets:1692   UCCGUAUCGAUCCCCUUCAAUCCA   1715 Target Full Sequence	2.0	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget
XM_008654469.2	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||*=|||||||=||||||||||* targets:3114   UCCGUAUCAAUCUCCUUCAAUCCA   3137 Target Full Sequence	2.5	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget
EU942844.1	ncRNA:24   AGGGGUAGUU-AGGGGAAGUUAGGA   1   *****|||||-|||||||||||||| targets:132   GGAAAAUCAAAUCCCCUUCAAUCCU   156 Target Full Sequence	2.0	Zea mays clone 1540330 mRNA sequence	NA	coding protein	psRNATarget
BT088155.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   ||=|=*||||||||||*||||||| targets:1463   UCUCUCUCAAUCCCCUCCAAUCCU   1486 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
EZ069159.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||=|**||||||||||||||||* targets:58   UCCUCUCCAAUCCCCUUCAAUCCC   81 Target Full Sequence	3.0	TSA: Zea mays contig04794, mRNA sequence	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||*=|||||||||||*||||||* targets:439   UCCAUAUCAAUCCCCUCCAAUCCA   462 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
XM_020539810.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||*=|||||||||||*||||||* targets:693   UCCGUAUCAAUCCCCUCCAAUCCA   716 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA	NA	coding protein	psRNATarget
BT062922.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||*=|||||||||||*||||||* targets:892   UCCAUAUCAAUCCCCUCCAAUCCA   915 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
EU959055.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||*=|||||||||||*||||||* targets:840   UCCAUAUCAAUCCCCUCCAAUCCA   863 Target Full Sequence	2.5	Zea mays clone 209821 mRNA sequence	NA	coding protein	psRNATarget
EU959258.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||*=|||||||||||*||||||* targets:838   UCCAUAUCAAUCCCCUCCAAUCCA   861 Target Full Sequence	2.5	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959345.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||*=|||||||||||*||||||* targets:839   UCCAUAUCAAUCCCCUCCAAUCCA   862 Target Full Sequence	2.5	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
XM_008666525.2	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||*=|||||||||||*||||||* targets:911   UCCAUAUCAAUCCCCUCCAAUCCA   934 Target Full Sequence	2.5	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
XM_020545207.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||*=|||||||||||*||||||* targets:16   UCCGUAUCAAUCCCCUCCAAUCCA   39 Target Full Sequence	2.5	PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||*=|||||||||||*||||||* targets:1974   UCCGUAUCAAUCCCCUCCAAUCCA   1997 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||*=|||||||||||*||||||* targets:1974   UCCGUAUCAAUCCCCUCCAAUCCA   1997 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||*=|||||||||||*||||||* targets:1624   UCCGUAUCAAUCCCCUCCAAUCCA   1647 Target Full Sequence	2.5	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
XM_008658561.2	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   |||*=|||||||||||*||||||* targets:295   UCCGUAUCAAUCCCCUCCAAUCCA   318 Target Full Sequence	2.5	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA	NA	coding protein	psRNATarget
EZ052660.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   *|*|*||||=|=|||||||||||| targets:128   GCGCAAUCAGUUCCCUUCAAUCCU   151 Target Full Sequence	2.5	TSA: Zea mays contig53781, mRNA sequence	NA	coding protein	psRNATarget
EU959053.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   *||*=|||||||||||*||||||* targets:838   YCCAUAUCAAUCCCCUCCAAUCCA   861 Target Full Sequence	2.5	Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
BT038739.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   *|*|*||||=|=|||||||||||| targets:964   GCGCAAUCAGUUCCCUUCAAUCCU   987 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0316N05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001142987.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   *|*|*||||=|=|||||||||||| targets:1293   GCGCAAUCAGUUCCCUUCAAUCCU   1316 Target Full Sequence	2.5	Zea mays uncharacterized LOC100216569 (LOC100216569), mRNA	NA	coding protein	psRNATarget
BT036972.1	ncRNA:24   AGGGGUAGUUAGGGGAAGUUAGGA   1   *|*|*||||=|=|||||||||||| targets:1293   GCGCAAUCAGUUCCCUUCAAUCCU   1316 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0149L07 mRNA, complete cds	NA	coding protein	psRNATarget