Search result

BaseInfo

ncRNA ID	novel_zma_miR3191
Species	Zea mays
Class	miRNA
Genome position	Chr3:129496066-129496151 [-]
Reference genome	RefGen_v4
Source	SRR2089715
Length	23
Mature sequence(if miRNA)	64 - AGGGAUCACGGGAGGAUGGAAGG - 86
Stem-loop(if miRNA)	--A       C        G            G    -    UA    GGGAUCA GGGAGGAU GAAGGGGAUUGA AGGA AAAU  U    ||||||| |||||||| |||||||||||| |||| ||||    CCCUAGU CUCUCCUA CUUUCCCUAACU UCCU UUUA  U UUC       A        A            -    C    CU
Stem-loop sequence	AGGGAUCACGGGAGGAUGGAAGGGGAUUGAGAGGAAAAUUAUUUCAUUUCUCCUUCAAUCCCUUUCAAUCCUCUCAUGAUCCCCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB166853.1	ncRNA:23   GGA-AGG-UAGGAGGGCACUAGGGA   1   |||-|||-||||||||||||||||| targets:61   CCUCUCCGAUCCUCCCGUGAUCCCU   85 Target Full Sequence	2.0	Sequence 4517 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238522.1	ncRNA:23   GGA-AGG-UAGGAGGGCACUAGGGA   1   |||-|||-||||||||||||||||| targets:61   CCUCUCCGAUCCUCCCGUGAUCCCU   85 Target Full Sequence	2.0	Sequence 4517 from Patent EP2985353	NA	coding protein	psRNATarget
HI406392.1	ncRNA:23   GGA-AGG-UAGGAGGGCACUAGGGA   1   |||-|||-||||||||||||||||| targets:61   CCUCUCCGAUCCUCCCGUGAUCCCU   85 Target Full Sequence	2.0	Sequence 4517 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001352049.1	ncRNA:23   GGA-AGG-UAGGAGGGCACUAGGGA   1   |||-|||-||||||||||||||||| targets:560   CCUCUCCGAUCCUCCCGUGAUCCCU   584 Target Full Sequence	2.0	Zea mays uncharacterized LOC100284194 (pco105859), transcript variant 2, mRNA	NA	coding protein	psRNATarget
XM_020547779.1	ncRNA:23   GGA-AGG-UAGGAGGGCACUAGGGA   1   |||-|||-||||||||||||||||| targets:588   CCUCUCCGAUCCUCCCGUGAUCCCU   612 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547780.1	ncRNA:23   GGA-AGG-UAGGAGGGCACUAGGGA   1   |||-|||-||||||||||||||||| targets:590   CCUCUCCGAUCCUCCCGUGAUCCCU   614 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JB163954.1	ncRNA:23   GGAAGGU-AGGAGGGCACUAGGGA   1   ||*||||-|||||||||||||||| targets:44   CCCUCCAAUCCUCCCGUGAUCCCU   67 Target Full Sequence	2.0	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
HI403493.1	ncRNA:23   GGAAGGU-AGGAGGGCACUAGGGA   1   ||*||||-|||||||||||||||| targets:44   CCCUCCAAUCCUCCCGUGAUCCCU   67 Target Full Sequence	2.0	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:23   GGAAGGU-AGGAGGGCACUAGGGA   1   ||*||||-|||||||||||||||| targets:44   CCCUCCAAUCCUCCCGUGAUCCCU   67 Target Full Sequence	2.0	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
EZ106816.1	ncRNA:23   GGAAGGUAGGAGGGCACUAGGGA   1   ***||*||||||||||||||||* targets:284   AAAUCAAUCCUCCCGUGAUCCCC   306 Target Full Sequence	2.0	TSA: Zea mays contig42474, mRNA sequence	NA	coding protein	psRNATarget