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BaseInfo

ncRNA ID	novel_zma_miR3188
Species	Zea mays
Class	miRNA
Genome position	Chr3:143860883-143860930 [-]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	25 - AACGAGCCAGCUCGAACUCGGAUG - 48
Stem-loop(if miRNA)	--              AA     A   AACGAGCCAGCUCG  CUCGG U   ||||||||||||||  ||||| G   UUGCUCGGUCGAGC  GAGCC A UA              -C     G
Stem-loop sequence	AACGAGCCAGCUCGAACUCGGAUGAGCCGAGCCGAGCUGGCUCGUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020549497.1	ncRNA:24   GUAGGCUCAAGCUCGACCGAGCAA   1   ==|||||||||||||||||||||| targets:3934   UGUCCGAGUUCGAGCUGGCUCGUU   3957 Target Full Sequence	0.0	PREDICTED: Zea mays Amino-acid permease BAT1 (si486073c04), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008673964.2	ncRNA:24   GUAGGCUCAAGCUCGACCGAGCAA   1   ==|||||||||||||||||||||| targets:3931   UGUCCGAGUUCGAGCUGGCUCGUU   3954 Target Full Sequence	0.0	PREDICTED: Zea mays Amino-acid permease BAT1 (si486073c04), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549495.1	ncRNA:24   GUAGGCUCAAGCUCGACCGAGCAA   1   ==|||||||||||||||||||||| targets:3932   UGUCCGAGUUCGAGCUGGCUCGUU   3955 Target Full Sequence	0.0	PREDICTED: Zea mays Amino-acid permease BAT1 (si486073c04), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU950141.1	ncRNA:24   GUAGGCUCAAGCUCGACCGAGCAA   1   |=*|||||*||||||||||||||| targets:223   CGACCGAGCUCGAGCUGGCUCGUU   246 Target Full Sequence	1.0	Zea mays clone 462989 mRNA sequence	NA	coding protein	psRNATarget
EU950141.1	ncRNA:24   GUAG--GCUCAAGCUCGACCGAGCAA   1   |=|=--||||*||||||||||||||| targets:313   CGUUUGCGAGCUCGAGCUGGCUCGUU   338 Target Full Sequence	1.0	Zea mays clone 462989 mRNA sequence	NA	coding protein	psRNATarget
JB163732.1	ncRNA:21   GGCUCAAGCUCGACCGAGCAA   1   =||=|||*||||||||||||| targets:1   UCGGGUUGGAGCUGGCUCGUU   21 Target Full Sequence	2.0	Sequence 1396 from Patent EP2559767	NA	coding protein	psRNATarget
HI403271.1	ncRNA:21   GGCUCAAGCUCGACCGAGCAA   1   =||=|||*||||||||||||| targets:1   UCGGGUUGGAGCUGGCUCGUU   21 Target Full Sequence	2.0	Sequence 1396 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235401.1	ncRNA:21   GGCUCAAGCUCGACCGAGCAA   1   =||=|||*||||||||||||| targets:1   UCGGGUUGGAGCUGGCUCGUU   21 Target Full Sequence	2.0	Sequence 1396 from Patent EP2985353	NA	coding protein	psRNATarget