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BaseInfo

ncRNA ID	novel_zma_miR3187
Species	Zea mays
Class	miRNA
Genome position	Chr7:60730180-60730260 [-]
Reference genome	RefGen_v4
Source	SRR1583944;SRR1583941;SRR1583942
Length	22
Mature sequence(if miRNA)	1 - GCUAUCUUCUUUUGCUUCUGGA - 22
Stem-loop(if miRNA)	--     U      C  --      C     A   U   UG     UAGAA GUAAGG GA  AUGGUA GAAGC GUA GCA  ACU   ||||| |||||| ||  |||||| ||||| ||| |||  ||U   GUCUU CGUUUU CU  UAUCGU CUUCG CGU CGU  UGU AG     -      -  UC      -     A   -   GU
Stem-loop sequence	UAGAAUGUAAGGCGAAUGGUACGAAGCAGUAUGCAUGACUUUGUUGUGCUGCAGCUUCUGCUAUCUUCUUUUGCUUCUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT066981.1	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   |=*||=|||||||||||||||* targets:1840   UUGAGGAGCAAAAGAAGAUAGG   1861 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0141F04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153844.2	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   |=*||=|||||||||||||||* targets:1922   UUGAGGAGCAAAAGAAGAUAGG   1943 Target Full Sequence	2.0	Zea mays ATP-dependent rRNA helicase spb4 (LOC100280924), mRNA	NA	coding protein	psRNATarget
EU954633.1	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   |=*||=|||||||||||||||* targets:1953   UUGAGGAGCAAAAGAAGAUAGG   1974 Target Full Sequence	2.0	Zea mays clone 1475195 ATP-dependent rRNA helicase spb4 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020549702.1	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   |=*||=|||||||||||||||* targets:2064   UUGAGGAGCAAAAGAAGAUAGG   2085 Target Full Sequence	2.0	PREDICTED: Zea mays ATP-dependent rRNA helicase spb4 (LOC100280924), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549701.1	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   |=*||=|||||||||||||||* targets:2151   UUGAGGAGCAAAAGAAGAUAGG   2172 Target Full Sequence	2.0	PREDICTED: Zea mays ATP-dependent rRNA helicase spb4 (LOC100280924), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020548818.1	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   **|=||||||||||||||||*| targets:350   GGCGGAAGCAAAAGAAGAUAAC   371 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109944147 (LOC109944147), mRNA	NA	coding protein	psRNATarget
XM_008676723.2	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   **|=||||||||||||||||*| targets:285   GGCGGAAGCAAAAGAAGAUAAC   306 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103651124 (LOC103651124), mRNA	NA	coding protein	psRNATarget
XM_020552178.1	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   **|=||||||||||||||||*| targets:1022   GGCGGAAGCAAAAGAAGAUAAC   1043 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein phosphatase 7 long form homolog (LOC109945820), mRNA	NA	coding protein	psRNATarget
XM_020549256.1	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   **|=||||||||||||||||*| targets:556   GGCGGAAGCAAAAGAAGAUAAC   577 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103646250 (LOC103646250), mRNA	NA	coding protein	psRNATarget
XM_020541659.1	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   **|=||||||||||||||||*| targets:736   GGCGGAAGCAAAAGAAGAUAAC   757 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein phosphatase 7 long form homolog (LOC103644657), mRNA	NA	coding protein	psRNATarget
XM_008651226.2	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   **|=||||||||||||||||*| targets:906   GGCGGAAGCAAAAGAAGAUAAC   927 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein phosphatase 7 long form homolog (LOC103630141), mRNA	NA	coding protein	psRNATarget
XM_020540972.1	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   **|=||||||||||||||||*| targets:906   GGCGGAAGCAAAAGAAGAUAAC   927 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein phosphatase 7 long form homolog (LOC103634238), mRNA	NA	coding protein	psRNATarget
XM_020544415.1	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   **|=||||||||||||||||*| targets:977   GGCGGAAGCAAAAGAAGAUAAC   998 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein phosphatase 7 long form homolog (LOC103644544), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020548630.1	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   **|=||||||||||||||||*| targets:1007   GGCGGAAGCAAAAGAAGAUAAC   1028 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein phosphatase 7 long form homolog (LOC109944083), mRNA	NA	coding protein	psRNATarget
XM_008678027.2	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   **|=||||||||||||||||*| targets:1213   GGCGGAAGCAAAAGAAGAUAAC   1234 Target Full Sequence	2.5	PREDICTED: Zea mays protein MAIN-LIKE 1-like (LOC103652448), mRNA	NA	coding protein	psRNATarget
XM_020544423.1	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   **|=||||||||||||||||*| targets:969   GGCGGAAGCAAAAGAAGAUAAC   990 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein phosphatase 7 long form homolog (LOC103639306), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544424.1	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   **|=||||||||||||||||*| targets:1036   GGCGGAAGCAAAAGAAGAUAAC   1057 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein phosphatase 7 long form homolog (LOC103639306), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020545761.1	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   **|=||||||||||||||||*| targets:906   GGCGGAAGCAAAAGAAGAUAAC   927 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein phosphatase 7 long form homolog (LOC109943021), mRNA	NA	coding protein	psRNATarget
XM_020544417.1	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   **|=||||||||||||||||*| targets:1244   GGCGGAAGCAAAAGAAGAUAAC   1265 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein phosphatase 7 long form homolog (LOC103644544), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544733.1	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   **|=||||||||||||||||*| targets:1274   GGCGGAAGCAAAAGAAGAUAAC   1295 Target Full Sequence	2.5	PREDICTED: Zea mays protein MAIN-LIKE 1-like (LOC103651860), mRNA	NA	coding protein	psRNATarget
XM_020538515.1	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   **|=||||||||||||||||*| targets:906   GGCGGAAGCAAAAGAAGAUAAC   927 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein phosphatase 7 long form homolog (LOC109939953), mRNA	NA	coding protein	psRNATarget
XM_008666658.2	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   **|=||||||||||||||||*| targets:380   GGCGGAAGCAAAAGAAGAUAAC   401 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103643457 (LOC103643457), mRNA	NA	coding protein	psRNATarget
XM_020546647.1	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   **|=||||||||||||||||*| targets:906   GGCGGAAGCAAAAGAAGAUAAC   927 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein phosphatase 7 long form homolog (LOC103645197), mRNA	NA	coding protein	psRNATarget
XM_020544426.1	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   **|=||||||||||||||||*| targets:906   GGCGGAAGCAAAAGAAGAUAAC   927 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein phosphatase 7 long form homolog (LOC109942429), mRNA	NA	coding protein	psRNATarget
XM_020544951.1	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   **|=||||||||||||||||*| targets:906   GGCGGAAGCAAAAGAAGAUAAC   927 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein phosphatase 7 long form homolog (LOC103644389), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020548491.1	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   **|=||||||||||||||||*| targets:3601   GGCGGAAGCAAAAGAAGAUAAC   3622 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103647367 (LOC103647367), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020548490.1	ncRNA:22   AGGUCUUCGUUUUCUUCUAUCG   1   **|=||||||||||||||||*| targets:3791   GGCGGAAGCAAAAGAAGAUAAC   3812 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103647367 (LOC103647367), transcript variant X1, mRNA	NA	coding protein	psRNATarget