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BaseInfo

ncRNA ID	novel_zma_miR3182
Species	Zea mays
Class	miRNA
Genome position	Chr3:214330372-214330453 [+]
Reference genome	RefGen_v4
Source	SRR2089715;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - GGAUUGAGGAGGAUUGGAGGGGAU - 24
Stem-loop(if miRNA)	--  A                                   A   GG UUGAGGAGGAUUGGAGGGGAUUAAAUCCCCUCCUU G   || |||||||||||||||||||||||||||||||||||   CC AACUCCUCCUAACCUCCCCUAAUUUAGGGGAGGGG G AA  G                                   A
Stem-loop sequence	GGAUUGAGGAGGAUUGGAGGGGAUUAAAUCCCCUCCUUAGGAGGGGAGGGGAUUUAAUCCCCUCCAAUCCUCCUCAAGCCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552749.1	ncRNA:24   UAGGGGAGGUUAGGAGGAGUUAGG   1   ||||||||||||||*||||||||| targets:3272   AUCCCCUCCAAUCCCCCUCAAUCC   3295 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:24   UAGGGGAGGUUAGGAGGAGUUAGG   1   ||||||||||||||*||||||||| targets:1593   AUCCCCUCCAAUCCCCCUCAAUCC   1616 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:24   UAGGGGAGGUUAGGAGGAGUUAGG   1   ||||||||||||||*||||||||| targets:1593   AUCCCCUCCAAUCCCCCUCAAUCC   1616 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
EZ083462.1	ncRNA:24   UAGGGGAGGUUAGGAGGAGUUAGG   1   |||||=||||||||*||||||||| targets:32   AUCCCUUCCAAUCCCCCUCAAUCC   55 Target Full Sequence	2.5	TSA: Zea mays contig19106, mRNA sequence	NA	coding protein	psRNATarget
XM_020547439.1	ncRNA:24   UAGGGGAGGUUAGGAGGAGUUAGG   1   ||||*|||||||||*||||||||| targets:3920   AUCCACUCCAAUCCCCCUCAAUCC   3943 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT061531.2	ncRNA:24   UAGGGGAGGUUAGGAGGAGUUAGG   1   |*|||||=||||||*||||||||| targets:842   AACCCCUUCAAUCCCCCUCAAUCC   865 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
EU942657.1	ncRNA:24   UAGGGGAGGUUAGGAGGAGUUAGG   1   |*|||*|||||||||*|||||||| targets:231   AACCCAUCCAAUCCUACUCAAUCC   254 Target Full Sequence	2.5	Zea mays clone 1527578 mRNA sequence	NA	coding protein	psRNATarget
NM_001196032.1	ncRNA:24   UAGGGGAGGUUAGGAGGAGUUAGG   1   =|=|*|||||*|||||=||||||| targets:371   GUUCGCUCCAUUCCUCUUCAAUCC   394 Target Full Sequence	2.5	Zea mays uncharacterized LOC100501270 (LOC100501270), mRNA	NA	coding protein	psRNATarget
BT084925.1	ncRNA:24   UAGGGGAGGUUAGGAGGAGUUAGG   1   =|=|*|||||*|||||=||||||| targets:371   GUUCGCUCCAUUCCUCUUCAAUCC   394 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0207G04 mRNA, complete cds	NA	coding protein	psRNATarget
EU949831.1	ncRNA:24   UAGGGGAGGUUAGGAGGAGUUAGG   1   |*|||*|||||||||*|||||||| targets:1009   AACCCAUCCAAUCCUACUCAAUCC   1032 Target Full Sequence	2.5	Zea mays clone 447574 mRNA sequence	NA	coding protein	psRNATarget
EU949726.1	ncRNA:24   UAGGGGAGGUUAGGAGGAGUUAGG   1   =|=|*|||||*|||||=||||||| targets:581   GUUCGCUCCAUUCCUCUUCAAUCC   604 Target Full Sequence	2.5	Zea mays clone 442532 mRNA sequence	NA	coding protein	psRNATarget
XM_008666493.2	ncRNA:24   UAGGGGAGGUUAGGAGGAGUUAGG   1   |*|||*|||||||||*|||||||| targets:3476   AACCCAUCCAAUCCUACUCAAUCC   3499 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546709.1	ncRNA:24   UAGGGGAGGUUAGGAGGAGUUAGG   1   |*|||*|||||||||*|||||||| targets:3462   AACCCAUCCAAUCCUACUCAAUCC   3485 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008666491.2	ncRNA:24   UAGGGGAGGUUAGGAGGAGUUAGG   1   |*|||*|||||||||*|||||||| targets:3744   AACCCAUCCAAUCCUACUCAAUCC   3767 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666492.2	ncRNA:24   UAGGGGAGGUUAGGAGGAGUUAGG   1   |*|||*|||||||||*|||||||| targets:3749   AACCCAUCCAAUCCUACUCAAUCC   3772 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539146.1	ncRNA:24   UAGGGGAGGUUAGGAGGAGUUAGG   1   =|=|*|||||*|||||=||||||| targets:5288   GUUCGCUCCAUUCCUCUUCAAUCC   5311 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100501270 (LOC100501270), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539145.1	ncRNA:24   UAGGGGAGGUUAGGAGGAGUUAGG   1   =|=|*|||||*|||||=||||||| targets:5395   GUUCGCUCCAUUCCUCUUCAAUCC   5418 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100501270 (LOC100501270), transcript variant X1, mRNA	NA	coding protein	psRNATarget