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BaseInfo

ncRNA ID	novel_zma_miR3181
Species	Zea mays
Class	miRNA
Genome position	Chr3:196366728-196366808 [+]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	1 - AGUUCAUUUAGAGAGUUGUUGGAG - 24
Stem-loop(if miRNA)	--     A        G  G     GA  AGUU       U   AGUUC UUUAGAGA UU UUGGA  GA    UUUAGGU A   ||||| |||||||| || |||||  ||    ||||||| A   UCAAG AGAUUUUU AG GAUUU  UU    AAAUCCA C UG     -        G  G     AG  -AUU       U
Stem-loop sequence	AGUUCAUUUAGAGAGUUGUUGGAGAGAAGUUUUUAGGUUAACUACCUAAAUUAUUGAUUUAGGGAGUUUUUAGAGAACUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020548642.1	ncRNA:24   GAGGUUGUUGAGAGAUUUACUUGA   1   ||||||||==|||||||||||||| targets:2775   CUCCAACAGUUCUCUAAAUGAACU   2798 Target Full Sequence	2.0	PREDICTED: Zea mays ubiquitin-like-specific protease ESD4 (LOC103647934), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669572.2	ncRNA:24   GAGGUUGUUGAGAGAUUUACUUGA   1   ||||||||==|||||||||||||| targets:2739   CUCCAACAGUUCUCUAAAUGAACU   2762 Target Full Sequence	2.0	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669570.2	ncRNA:24   GAGGUUGUUGAGAGAUUUACUUGA   1   ||||||||==|||||||||||||| targets:2529   CUCCAACAGUUCUCUAAAUGAACU   2552 Target Full Sequence	2.0	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547655.1	ncRNA:24   GAGGUUGUUGAGAGAUUUACUUGA   1   ||||||||==|||||||||||||| targets:2485   CUCCAACAGUUCUCUAAAUGAACU   2508 Target Full Sequence	2.0	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X4, mRNA	NA	coding protein	psRNATarget
BT054396.1	ncRNA:24   GAGGUUGUUGAGAGAUUUACUUGA   1   ||||||||==|||||||||||||| targets:1332   CUCCAACAGUUCUCUAAAUGAACU   1355 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0030F12 mRNA, complete cds	NA	coding protein	psRNATarget
EZ085047.1	ncRNA:24   GAG--GUUGUUGAGAGAUUUACUUGA   1   |||--|||||==|||||||||||||| targets:49   CUCACCAACAGUUCUCUAAAUGAACU   74 Target Full Sequence	2.0	TSA: Zea mays contig20691, mRNA sequence	NA	coding protein	psRNATarget
XM_008675809.2	ncRNA:24   GAG--GUUGUUGAGAGAUUUACUUGA   1   =|=--==|=|||||||||||*||||| targets:4165   UUUGAUGAUAACUCUCUAAAAGAACU   4190 Target Full Sequence	2.5	PREDICTED: Zea mays auxilin-related protein 1 (LOC103650168), transcript variant X2, mRNA	NA	coding protein	psRNATarget