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BaseInfo

ncRNA ID novel_zma_miR3179
Species Zea mays
Class miRNA
Genome position Chr3:187850466-187850632 [+]
Reference genome RefGen_v4
Source SRR2089715
Length 21
Mature sequence(if miRNA) 1 - GCAAGCAAACCAUAUGAUCCA - 21
Stem-loop(if miRNA) --         C   A    C        CG                C   U   ACACUUAAACCCUUCCACCACCAGCUCAA
  GCAAGCAAA CAU UGAU CAUUAGAU  UGAUCCAACCGUAGGU ACA UUA                             U
  ||||||||| ||| |||| ||||||||  |||||||||||||||| ||| |||
  CGUUCGUUU GUA ACUA GUAAUCUA  ACUAGGUUGGUGUCUA UGU AGU                             A
UA         A   G    U        AU                -   U   ACCAAACAAUCCCCAAAAAAAUAUUUCUA
Stem-loop sequence GCAAGCAAACCAUAUGAUCCAUUAGAUCGUGAUCCAACCGUAGGUCACAUUUAACACUUAAACCCUUCCACCACCAGCUCAAUAAUCUUUAUAAAAAAACCCCUAACAAACCAUGAUUGUAUCUGUGGUUGGAUCAUAAUCUAAUGUAUCAGAUGAUUUGCUUGCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163856.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*|||||||||||||
targets:173   UGGAUCAGAUGGUUUGCUUGC   193

1.0 Sequence 1520 from Patent EP2559767 NA coding protein psRNATarget
HI403395.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*|||||||||||||
targets:173   UGGAUCAGAUGGUUUGCUUGC   193

1.0 Sequence 1520 from Patent EP2074227 NA coding protein psRNATarget
LQ235525.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*|||||||||||||
targets:173   UGGAUCAGAUGGUUUGCUUGC   193

1.0 Sequence 1520 from Patent EP2985353 NA coding protein psRNATarget
JB163560.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*|||||||||||||
targets:179   UGGAUCAGAUGGUUUGCUUGC   199

1.0 Sequence 1224 from Patent EP2559767 NA coding protein psRNATarget
HI403099.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*|||||||||||||
targets:179   UGGAUCAGAUGGUUUGCUUGC   199

1.0 Sequence 1224 from Patent EP2074227 NA coding protein psRNATarget
LQ235229.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*|||||||||||||
targets:179   UGGAUCAGAUGGUUUGCUUGC   199

1.0 Sequence 1224 from Patent EP2985353 NA coding protein psRNATarget
JB163648.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*|||||||||||||
targets:173   UGGAUCAGAUGGUUUGCUUGC   193

1.0 Sequence 1312 from Patent EP2559767 NA coding protein psRNATarget
HI403187.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*|||||||||||||
targets:173   UGGAUCAGAUGGUUUGCUUGC   193

1.0 Sequence 1312 from Patent EP2074227 NA coding protein psRNATarget
LQ235317.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*|||||||||||||
targets:173   UGGAUCAGAUGGUUUGCUUGC   193

1.0 Sequence 1312 from Patent EP2985353 NA coding protein psRNATarget
XM_008679933.2
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*|||||||||||||
targets:1799   UGGAUCAGAUGGUUUGCUUGC   1819

1.0 PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020538741.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*|||||||||||||
targets:974   UGGAUCAGAUGGUUUGCUUGC   994

1.0 PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008648194.2
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*|||||||||||||
targets:974   UGGAUCAGAUGGUUUGCUUGC   994

1.0 PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X1, mRNA NA coding protein psRNATarget
LQ235556.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*||||||||=||||
targets:172   UGGAUCAGAUGGUUUGUUUGC   192

2.5 Sequence 1551 from Patent EP2985353 NA coding protein psRNATarget
JB163887.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*||||||||=||||
targets:172   UGGAUCAGAUGGUUUGUUUGC   192

2.5 Sequence 1551 from Patent EP2559767 NA coding protein psRNATarget
HI403426.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*||||||||=||||
targets:172   UGGAUCAGAUGGUUUGUUUGC   192

2.5 Sequence 1551 from Patent EP2074227 NA coding protein psRNATarget
XM_008664646.2
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*||||||||=||||
targets:376   UGGAUCAGAUGGUUUGUUUGC   396

2.5 PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008664645.2
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*||||||||=||||
targets:376   UGGAUCAGAUGGUUUGUUUGC   396

2.5 PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008664644.2
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*||||||||=||||
targets:376   UGGAUCAGAUGGUUUGUUUGC   396

2.5 PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X2, mRNA NA coding protein psRNATarget
BT035131.1
ncRNA:21   ACCUA-GUAUACCAAACGAACG   1
  ||*||-||||||||||||||||
targets:388   UGCAUACAUAUGGUUUGCUUGC   409

3.0 Zea mays full-length cDNA clone ZM_BFb0041E21 mRNA, complete cds NA coding protein psRNATarget
JB163464.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*||||*||||||||
targets:181   UGGAUCAGAUGGAUUGCUUGC   201

2.5 Sequence 1128 from Patent EP2559767 NA coding protein psRNATarget
LQ235133.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*||||*||||||||
targets:181   UGGAUCAGAUGGAUUGCUUGC   201

2.5 Sequence 1128 from Patent EP2985353 NA coding protein psRNATarget
HI403003.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*||||*||||||||
targets:181   UGGAUCAGAUGGAUUGCUUGC   201

2.5 Sequence 1128 from Patent EP2074227 NA coding protein psRNATarget
HI402933.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*|||*|||||||||
targets:180   UGGAUCAGAUGAUUUGCUUGC   200

2.5 Sequence 1058 from Patent EP2074227 NA coding protein psRNATarget
LQ235063.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*|||*|||||||||
targets:180   UGGAUCAGAUGAUUUGCUUGC   200

2.5 Sequence 1058 from Patent EP2985353 NA coding protein psRNATarget
JB163394.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*|||*|||||||||
targets:180   UGGAUCAGAUGAUUUGCUUGC   200

2.5 Sequence 1058 from Patent EP2559767 NA coding protein psRNATarget
XM_008680394.2
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  ||*||||*|||||||||||||
targets:267   UGAAUCAGAUGGUUUGCUUGC   287

2.0 PREDICTED: Zea mays mini zinc finger protein 4 (LOC103653502), mRNA NA coding protein psRNATarget
BT063462.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*||||||||||*||
targets:449   UGGAUCAGAUGGUUUGCUAGC   469

2.5 Zea mays full-length cDNA clone ZM_BFc0066A17 mRNA, complete cds NA coding protein psRNATarget
NM_001153369.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*||||||||||*||
targets:469   UGGAUCAGAUGGUUUGCUAGC   489

2.5 Zea mays Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2 (gpm893), mRNA NA coding protein psRNATarget
EU951781.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |||||||*||||||||||*||
targets:469   UGGAUCAGAUGGUUUGCUAGC   489

2.5 Zea mays clone 1000046 pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit mRNA, complete cds NA coding protein psRNATarget
EU969532.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  ***||==||||||||||||||
targets:932   CUCAUUGUAUGGUUUGCUUGC   952

3.0 Zea mays clone 331582 tumor-related protein mRNA, complete cds NA coding protein psRNATarget
BT042910.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  ***||==||||||||||||||
targets:988   CUCAUUGUAUGGUUUGCUUGC   1008

3.0 Zea mays full-length cDNA clone ZM_BFc0062M05 mRNA, complete cds NA coding protein psRNATarget
NM_001148747.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  ***||==||||||||||||||
targets:988   CUCAUUGUAUGGUUUGCUUGC   1008

3.0 Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100274387), mRNA NA coding protein psRNATarget
JB163917.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |*|||||*||*||||||||||
targets:174   UAGAUCAGAUAGUUUGCUUGC   194

2.5 Sequence 1581 from Patent EP2559767 NA coding protein psRNATarget
HI403456.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |*|||||*||*||||||||||
targets:174   UAGAUCAGAUAGUUUGCUUGC   194

2.5 Sequence 1581 from Patent EP2074227 NA coding protein psRNATarget
LQ235586.1
ncRNA:21   ACCUAGUAUACCAAACGAACG   1
  |*|||||*||*||||||||||
targets:174   UAGAUCAGAUAGUUUGCUUGC   194

2.5 Sequence 1581 from Patent EP2985353 NA coding protein psRNATarget
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