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BaseInfo

ncRNA ID	novel_zma_miR3178
Species	Zea mays
Class	miRNA
Genome position	Chr3:182503864-182503978 [+]
Reference genome	RefGen_v4
Source	SRR2089715;SRR5451005
Length	24
Mature sequence(if miRNA)	92 - AAAGUGGAAUAAAUUAGAGGGACU - 115
Stem-loop(if miRNA)	--      CAU                 UA       CA              UAAC   UCCCUC   UUUAUUCCACUUUAGUC  UAAAUUG  AAAUAUGGAAACUA    U   ||||||   |||||||||||||||||  |||||||  ||||||||||||||    C   AGGGAG   AAAUAAGGUGAAAUCAG  AUUUAAC  UUUAUACUUUUGAU    U UC      AUU                 UG       AG              UUUA
Stem-loop sequence	UCCCUCCAUUUUAUUCCACUUUAGUCUAUAAAUUGCAAAAUAUGGAAACUAUAACUCUAUUUUAGUUUUCAUAUUUGACAAUUUAGUGACUAAAGUGGAAUAAAUUAGAGGGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552869.1	ncRNA:24   UCAGGGAGAUUAAAUAAGGUGAAA   1   ||||||||*||||||||||||||| targets:1659   AGUCCCUCCAAUUUAUUCCACUUU   1682 Target Full Sequence	1.0	PREDICTED: Zea mays NADPH:adrenodoxin oxidoreductase, mitochondrial-like (LOC109946102), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550132.1	ncRNA:24   UCAGGGAGAUUAAAUAAGGUGAAA   1   ||||||||*||||||||||||||| targets:20   AGUCCCUCCAAUUUAUUCCACUUU   43 Target Full Sequence	1.0	PREDICTED: Zea mays putrescine hydroxycinnamoyltransferase 1-like (LOC103649816), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU945607.1	ncRNA:24   UCAGGGAGAUUAAAUAAGGUGAAA   1   ||||||||*|||||||||||=||| targets:143   AGUCCCUCCAAUUUAUUCCAUUUU   166 Target Full Sequence	2.5	Zea mays clone 279279 mRNA sequence	NA	coding protein	psRNATarget
XM_008647122.2	ncRNA:24   UCAGGGAGAUUAAAUAAGGUGAAA   1   ||||||||*|*||||||||||||| targets:2989   AGUCCCUCCAUUUUAUUCCACUUU   3012 Target Full Sequence	2.0	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:24   UCAGGGAGAUUAAAUAAGGUGAAA   1   ||||||||*|*||||||||||||| targets:2600   AGUCCCUCCAUUUUAUUCCACUUU   2623 Target Full Sequence	2.0	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651702.2	ncRNA:24   UCAGGGAGAUUAAAUAAGGUGAAA   1   ||||||||*|*||||||||||||| targets:482   AGUCCCUCCAUUUUAUUCCACUUU   505 Target Full Sequence	2.0	PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020549268.1	ncRNA:24   UCAGGGAGAUUAAAUAAGGUGAAA   1   |||==*||*||||||||||||||| targets:1142   AGUUUAUCCAAUUUAUUCCACUUU   1165 Target Full Sequence	2.0	PREDICTED: Zea mays ethylene-responsive transcription factor ERF039 (LOC100283619), mRNA	NA	coding protein	psRNATarget
XM_008660555.2	ncRNA:24   UCAGGGAGAUUAAAUAAGGUGAAA   1   |||||||**|*||||||||||||| targets:1917   AGUCCCUACAUUUUAUUCCACUUU   1940 Target Full Sequence	3.0	PREDICTED: Zea mays pentatricopeptide repeat protein PPR566-6 (LOC100381697), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB167254.1	ncRNA:24   UCAGGGAGAUUAAAUAAGGUGAAA   1   |*||||||**|||||||||||||| targets:9   AAUCCCUCCCAUUUAUUCCACUUU   32 Target Full Sequence	2.0	Sequence 4918 from Patent EP2559767	NA	coding protein	psRNATarget
HI406793.1	ncRNA:24   UCAGGGAGAUUAAAUAAGGUGAAA   1   |*||||||**|||||||||||||| targets:9   AAUCCCUCCCAUUUAUUCCACUUU   32 Target Full Sequence	2.0	Sequence 4918 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238923.1	ncRNA:24   UCAGGGAGAUUAAAUAAGGUGAAA   1   |*||||||**|||||||||||||| targets:9   AAUCCCUCCCAUUUAUUCCACUUU   32 Target Full Sequence	2.0	Sequence 4918 from Patent EP2985353	NA	coding protein	psRNATarget