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BaseInfo

ncRNA ID novel_zma_miR3173
Species Zea mays
Class miRNA
Genome position Chr3:150187804-150187950 [+]
Reference genome RefGen_v4
Source SRR2089715;SRR2287162;SRR2089706
Length 24
Mature sequence(if miRNA) 124 - ACUGUUUGUAGAGUGUAGUUUGAA - 147
Stem-loop(if miRNA) --                    A     -A    GUGUUUUGGUGACCAUAUAGGUGAACCGUUGUAUAUUGCA
  CAAACUACACUCUAUAAACA UGCAA  AAUA                                        C
  |||||||||||||||||||| |||||  ||||
  GUUUGAUGUGAGAUGUUUGU ACGUU  AUGU                                        C
AA                    C     AC    UACACUUUAUCACGUUUUGUCACAAAACCUACUGGUAUAG
Stem-loop sequence CAAACUACACUCUAUAAACAAUGCAAAAAUAGUGUUUUGGUGACCAUAUAGGUGAACCGUUGUAUAUUGCACCGAUAUGGUCAUCCAAAACACUGUUUUGCACUAUUUCACAUUGUACAUUGCACUGUUUGUAGAGUGUAGUUUGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001158478.1
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  |||||||||=||||||=|||||||
targets:1067   UUCAAACUAUACUCUAUAAACAGU   1090

2.5 Zea mays DNA-3-methyladenine glycosylase 1 (LOC100285587), mRNA NA coding protein psRNATarget
EU973003.1
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  |||||||||=||||||=|||||||
targets:1067   UUCAAACUAUACUCUAUAAACAGU   1090

2.5 Zea mays clone 391534 DNA-3-methyladenine glycosylase 1 mRNA, complete cds NA coding protein psRNATarget
BT086112.1
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  ||||||*|||||||||||||||||
targets:1887   UUCAAAGUACACUCUACAAACAGU   1910

1.0 Zea mays full-length cDNA clone ZM_BFc0117E24 mRNA, complete cds NA coding protein psRNATarget
EU971278.1
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  ||||||||||||||||||||||*|
targets:1350   UUCAAACUACACUCUACAAACAAU   1373

1.5 Zea mays clone 361257 mRNA sequence NA coding protein psRNATarget
BT067480.1
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  ||=|||||*|||||||||||||||
targets:1233   UUUAAACUUCACUCUACAAACAGU   1256

1.0 Zea mays full-length cDNA clone ZM_BFc0063K12 mRNA, complete cds NA coding protein psRNATarget
NM_001149242.1
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  ||=|||||*|||||||||||||||
targets:1233   UUUAAACUUCACUCUACAAACAGU   1256

1.0 Zea mays hypothetical protein (LOC100275042), mRNA NA coding protein psRNATarget
NM_001147196.1
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  ||||||||*|=|||||||||||||
targets:981   UUCAAACUUCGCUCUACAAACAGU   1004

2.0 Zea mays THO complex subunit 4B (si946052g10b), mRNA NA coding protein psRNATarget
BT039327.1
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  ||||||||*|=|||||||||||||
targets:981   UUCAAACUUCGCUCUACAAACAGU   1004

2.0 Zea mays full-length cDNA clone ZM_BFc0005M04 mRNA, complete cds NA coding protein psRNATarget
BT036433.1
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  ||||||||*|||||||=|||||||
targets:554   UUCAAACUCCACUCUAUAAACAGU   577

2.5 Zea mays full-length cDNA clone ZM_BFb0113I15 mRNA, complete cds NA coding protein psRNATarget
XM_020550050.1
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  ||||||||*||||||=||||||||
targets:1053   UUCAAACUUCACUCUGCAAACAGU   1076

2.5 PREDICTED: Zea mays uncharacterized LOC541932 (umc1540), transcript variant X1, mRNA NA coding protein psRNATarget
EU965596.1
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  ||||||||*||||||=||||||||
targets:1182   UUCAAACUCCACUCUGCAAACAGU   1205

2.5 Zea mays clone 287279 2-dehydro-3-deoxyphosphooctonate aldolase mRNA, complete cds NA coding protein psRNATarget
EU963544.1
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  ||||||||*=||||||||||||||
targets:780   UUCAAACUUUACUCUACAAACAGU   803

2.0 Zea mays clone 263928 mRNA sequence NA coding protein psRNATarget
AY111263.1
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  ||*|||=|||||||||||||||||
targets:483   UUAAAAUUACACUCUACAAACAGU   506

1.0 Zea mays CL8731_1 mRNA sequence NA coding protein psRNATarget
EU947328.1
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  ||||||||*|||||||=|||||||
targets:111   UUCAAACUUCACUCUAUAAACAGU   134

2.5 Zea mays clone 339227 mRNA sequence NA coding protein psRNATarget
EU966417.1
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  *|||||||*|||||||||||||||
targets:449   CUCAAACUUCACUCUACAAACAGU   472

1.0 Zea mays clone 294325 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
LQ238616.1
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  *|||||||*|||||||||||||||
targets:127   CUCAAACUUCACUCUACAAACAGU   150

1.0 Sequence 4611 from Patent EP2985353 NA coding protein psRNATarget
JB166947.1
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  *|||||||*|||||||||||||||
targets:127   CUCAAACUUCACUCUACAAACAGU   150

1.0 Sequence 4611 from Patent EP2559767 NA coding protein psRNATarget
HI406486.1
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  *|||||||*|||||||||||||||
targets:127   CUCAAACUUCACUCUACAAACAGU   150

1.0 Sequence 4611 from Patent EP2074227 NA coding protein psRNATarget
XM_020549419.1
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  ||||=|||*|||||||=|||||||
targets:1425   UUCAGACUUCACUCUAUAAACAGU   1448

2.5 PREDICTED: Zea mays molybdopterin biosynthesis protein CNX1 (LOC103645808), mRNA NA coding protein psRNATarget
BT042149.1
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  *|||||||*||||||||||||||*
targets:1269   CUCAAACUUCACUCUACAAACAGA   1292

2.0 Zea mays full-length cDNA clone ZM_BFb0146I19 mRNA, complete cds NA coding protein psRNATarget
NM_001148370.1
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  *|||||||*||||||||||||||*
targets:1269   CUCAAACUUCACUCUACAAACAGA   1292

2.0 Zea mays O-sialoglycoprotein endopeptidase (LOC100273984), mRNA NA coding protein psRNATarget
XM_008677187.2
ncRNA:24   AAG-UUUGAUGUGAGAUGUUUGUCA   1
  |||-|||||*|||||||||||=|||
targets:785   UUCUAAACUUCACUCUACAAAUAGU   809

2.5 PREDICTED: Zea mays hypersensitive-induced response protein 3-like (LOC103651540), mRNA NA coding protein psRNATarget
EU973746.1
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  *|=||*||||||||||=|||||||
targets:826   CUUAAUCUACACUCUAUAAACAGU   849

2.5 Zea mays clone 407943 mRNA sequence NA coding protein psRNATarget
XM_008667085.2
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  ||=|||||*|||||||||||||*|
targets:4323   UUUAAACUUCACUCUACAAACAAU   4346

2.5 PREDICTED: Zea mays phytochrome A-like (LOC103643916), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008667086.2
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  ||=|||||*|||||||||||||*|
targets:4305   UUUAAACUUCACUCUACAAACAAU   4328

2.5 PREDICTED: Zea mays phytochrome A-like (LOC103643916), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008667089.2
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  ||=|||||*|||||||||||||*|
targets:4228   UUUAAACUUCACUCUACAAACAAU   4251

2.5 PREDICTED: Zea mays phytochrome A-like (LOC103643916), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020546903.1
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  ||=|||||*|||||||||||||*|
targets:4220   UUUAAACUUCACUCUACAAACAAU   4243

2.5 PREDICTED: Zea mays phytochrome A-like (LOC103643916), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008667087.2
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  ||=|||||*|||||||||||||*|
targets:4204   UUUAAACUUCACUCUACAAACAAU   4227

2.5 PREDICTED: Zea mays phytochrome A-like (LOC103643916), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546902.1
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  ||=|||||*|||||||||||||*|
targets:4180   UUUAAACUUCACUCUACAAACAAU   4203

2.5 PREDICTED: Zea mays phytochrome A-like (LOC103643916), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020539586.1
ncRNA:24   AAGUUUGAUGUGAGAUGUUUGUCA   1
  ||=||||**=||||||||||||||
targets:1944   UUUAAACCUUACUCUACAAACAGU   1967

3.0 PREDICTED: Zea mays uncharacterized LOC103630449 (LOC103630449), mRNA NA coding protein psRNATarget
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