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BaseInfo

ncRNA ID novel_zma_miR3171
Species Zea mays
Class miRNA
Genome position Chr3:134319146-134319195 [+]
Reference genome RefGen_v4
Source SRR2089715;SRR2647390
Length 24
Mature sequence(if miRNA) 27 - UUUGAAGCUAUGCGCGUUCGUCGU - 50
Stem-loop(if miRNA) --   CUC             UG A
  GAU   GCGCGCAUGGUUU  A G
  |||   |||||||||||||  | G
  CUG   UGCGCGUAUCGAA  U U
UG   -CU             GU U
Stem-loop sequence GAUCUCGCGCGCAUGGUUUUGAAGGUUUUGAAGCUAUGCGCGUUCGUCGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ089835.1
ncRNA:24   UGCUGCUUGCGCGUAUCGAAGUUU   1
  ||||||||||||||||||||||||
targets:71   ACGACGAACGCGCAUAGCUUCAAA   94

0.0 TSA: Zea mays contig25481, mRNA sequence NA coding protein psRNATarget