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BaseInfo

ncRNA ID novel_zma_miR3170
Species Zea mays
Class miRNA
Genome position Chr3:124143939-124144044 [+]
Reference genome RefGen_v4
Source SRR2089715;SRR2287161
Length 24
Mature sequence(if miRNA) 83 - AACUAAAGUGGAAUAAAAUGUAUG - 106
Stem-loop(if miRNA) --UU                 --    U      A        A          
    UAUUUUGUUCCAUUUUA  UAUA AAAUUG CAAAUAUA AAAUUAAAAUA
    |||||||||||||||||  |||| |||||| |||||||| ||||||||||G
    GUAAAAUAAGGUGAAAU  AUGU UUUAAU GUUUAUAU UUUGAUUUUGA
GUAU                 CA    -      A        C          
Stem-loop sequence UUUAUUUUGUUCCAUUUUAUAUAUAAAUUGACAAAUAUAAAAAUUAAAAUAGAGUUUUAGUUUCUAUAUUUGAUAAUUUUGUAACUAAAGUGGAAUAAAAUGUAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008660555.2
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||||||||||||
targets:1921   CCUACAUUUUAUUCCACUUUAGUU   1944

0.0 PREDICTED: Zea mays pentatricopeptide repeat protein PPR566-6 (LOC100381697), transcript variant X1, mRNA NA coding protein psRNATarget
EU957896.1
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||||||||||||
targets:1274   CUUACAUUUUAUUCCACUUUAGUU   1297

0.0 Zea mays clone 1630391 mRNA sequence NA coding protein psRNATarget
XM_020542840.1
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||||=|||||||
targets:1003   CCUACAUUUUAUUCCAUUUUAGUU   1026

1.5 PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020553397.1
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||||=|||||||
targets:583   CCUACAUUUUAUUCCAUUUUAGUU   606

1.5 PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001139183.1
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  =*||||||||||||||=|||||||
targets:846   UCUACAUUUUAUUCCAUUUUAGUU   869

1.5 Zea mays hypothetical protein (LOC100194130), mRNA NA coding protein psRNATarget
BT036582.1
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  =*||||||||||||||=|||||||
targets:846   UCUACAUUUUAUUCCAUUUUAGUU   869

1.5 Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds NA coding protein psRNATarget
XM_008651702.2
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  |*|*||||||||||||||||||||
targets:486   CCUCCAUUUUAUUCCACUUUAGUU   509

0.0 PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA NA coding protein psRNATarget
JB163514.1
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  |||-||||||||||||=||||||*
targets:35   CAU-CAUUUUAUUCCAUUUUAGUG   57

2.5 Sequence 1178 from Patent EP2559767 NA coding protein psRNATarget
HI403053.1
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  |||-||||||||||||=||||||*
targets:35   CAU-CAUUUUAUUCCAUUUUAGUG   57

2.5 Sequence 1178 from Patent EP2074227 NA coding protein psRNATarget
LQ235183.1
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  |||-||||||||||||=||||||*
targets:35   CAU-CAUUUUAUUCCAUUUUAGUG   57

2.5 Sequence 1178 from Patent EP2985353 NA coding protein psRNATarget
EZ052166.1
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  |*||*|||||||||||=|||||||
targets:783   CCUAGAUUUUAUUCCAUUUUAGUU   806

1.5 TSA: Zea mays contig53286, mRNA sequence NA coding protein psRNATarget
HI403052.1
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  |*|*||||||||||||=|||||||
targets:33   CCUUCAUUUUAUUCCAUUUUAGUU   56

1.5 Sequence 1177 from Patent EP2074227 NA coding protein psRNATarget
LQ235182.1
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  |*|*||||||||||||=|||||||
targets:33   CCUUCAUUUUAUUCCAUUUUAGUU   56

1.5 Sequence 1177 from Patent EP2985353 NA coding protein psRNATarget
JB163513.1
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  |*|*||||||||||||=|||||||
targets:33   CCUUCAUUUUAUUCCAUUUUAGUU   56

1.5 Sequence 1177 from Patent EP2559767 NA coding protein psRNATarget
XM_008647122.2
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  |*|*|||||||||||||||||||*
targets:2993   CCUCCAUUUUAUUCCACUUUAGUC   3016

1.0 PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008647123.2
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  |*|*|||||||||||||||||||*
targets:2604   CCUCCAUUUUAUUCCACUUUAGUC   2627

1.0 PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA NA coding protein psRNATarget
BT063047.1
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  |*|*||||||||||||=||||||*
targets:2103   CCUUCAUUUUAUUCCAUUUUAGUC   2126

2.5 Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds NA coding protein psRNATarget
NM_001174830.1
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  |*|*||||||||||||=||||||*
targets:2103   CCUUCAUUUUAUUCCAUUUUAGUC   2126

2.5 Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA NA coding protein psRNATarget
BT019141.1
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  |*|*||||||||||||=||||||*
targets:298   CCUCCAUUUUAUUCCAUUUUAGUC   321

2.5 Zea mays clone Contig786.F mRNA sequence NA coding protein psRNATarget
XM_020549268.1
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  =||*||*||||||||||||||||*
targets:1146   UAUCCAAUUUAUUCCACUUUAGUC   1169

2.0 PREDICTED: Zea mays ethylene-responsive transcription factor ERF039 (LOC100283619), mRNA NA coding protein psRNATarget
LQ238843.1
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  |*|*||||||||||||=||||||*
targets:173   CCUCCAUUUUAUUCCAUUUUAGUC   196

2.5 Sequence 4838 from Patent EP2985353 NA coding protein psRNATarget
JB167174.1
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  |*|*||||||||||||=||||||*
targets:173   CCUCCAUUUUAUUCCAUUUUAGUC   196

2.5 Sequence 4838 from Patent EP2559767 NA coding protein psRNATarget
HI406713.1
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  |*|*||||||||||||=||||||*
targets:173   CCUCCAUUUUAUUCCAUUUUAGUC   196

2.5 Sequence 4838 from Patent EP2074227 NA coding protein psRNATarget
XM_020545045.1
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  =*|*||||||||||||=||||||*
targets:2155   UCUCCAUUUUAUUCCAUUUUAGUC   2178

2.5 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget
HI406419.1
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  |*|*||||||||||||=||||||*
targets:82   CCUCCAUUUUAUUCCAUUUUAGUC   105

2.5 Sequence 4544 from Patent EP2074227 NA coding protein psRNATarget
JB166880.1
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  |*|*||||||||||||=||||||*
targets:82   CCUCCAUUUUAUUCCAUUUUAGUC   105

2.5 Sequence 4544 from Patent EP2559767 NA coding protein psRNATarget
LQ238549.1
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  |*|*||||||||||||=||||||*
targets:82   CCUCCAUUUUAUUCCAUUUUAGUC   105

2.5 Sequence 4544 from Patent EP2985353 NA coding protein psRNATarget
HI403309.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1434 from Patent EP2074227 NA coding protein psRNATarget
JB163880.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1544 from Patent EP2559767 NA coding protein psRNATarget
JB163892.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UUCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1556 from Patent EP2559767 NA coding protein psRNATarget
HI403270.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1395 from Patent EP2074227 NA coding protein psRNATarget
LQ235521.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UUCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1516 from Patent EP2985353 NA coding protein psRNATarget
JB163731.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1395 from Patent EP2559767 NA coding protein psRNATarget
LQ235561.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UUCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1556 from Patent EP2985353 NA coding protein psRNATarget
HI403431.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UUCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1556 from Patent EP2074227 NA coding protein psRNATarget
JB163852.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UUCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1516 from Patent EP2559767 NA coding protein psRNATarget
JB163770.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1434 from Patent EP2559767 NA coding protein psRNATarget
LQ235549.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1544 from Patent EP2985353 NA coding protein psRNATarget
LQ235490.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1485 from Patent EP2985353 NA coding protein psRNATarget
LQ235439.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1434 from Patent EP2985353 NA coding protein psRNATarget
LQ235400.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1395 from Patent EP2985353 NA coding protein psRNATarget
JB163821.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1485 from Patent EP2559767 NA coding protein psRNATarget
HI403391.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UUCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1516 from Patent EP2074227 NA coding protein psRNATarget
HI403360.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1485 from Patent EP2074227 NA coding protein psRNATarget
HI403419.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1544 from Patent EP2074227 NA coding protein psRNATarget
JB163726.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1390 from Patent EP2559767 NA coding protein psRNATarget
LQ235395.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1390 from Patent EP2985353 NA coding protein psRNATarget
HI403265.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1390 from Patent EP2074227 NA coding protein psRNATarget
LQ235572.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1567 from Patent EP2985353 NA coding protein psRNATarget
JB163878.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1542 from Patent EP2559767 NA coding protein psRNATarget
HI403417.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1542 from Patent EP2074227 NA coding protein psRNATarget
HI403442.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1567 from Patent EP2074227 NA coding protein psRNATarget
JB163903.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1567 from Patent EP2559767 NA coding protein psRNATarget
LQ235547.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*||||||||||||=||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1542 from Patent EP2985353 NA coding protein psRNATarget
HI403371.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*=|||||||||||=||||||*
targets:1   UCUAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1496 from Patent EP2074227 NA coding protein psRNATarget
JB163832.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*=|||||||||||=||||||*
targets:1   UCUAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1496 from Patent EP2559767 NA coding protein psRNATarget
LQ235501.1
ncRNA:22   AUGUAAAAUAAGGUGAAAUCAA   1
  |*=|||||||||||=||||||*
targets:1   UCUAUUUUAUUCCAUUUUAGUC   22

2.5 Sequence 1496 from Patent EP2985353 NA coding protein psRNATarget
EU967664.1
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  =*|*||*|||||||||=|||||||
targets:1130   UCUCCACUUUAUUCCAUUUUAGUU   1153

2.5 Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds NA coding protein psRNATarget
NM_001112602.2
ncRNA:24   GUAUGUAAAAUAAGGUGAAAUCAA   1
  =*|*||*|||||||||=|||||||
targets:1130   UCUCCACUUUAUUCCAUUUUAGUU   1153

2.5 Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA NA coding protein psRNATarget
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