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BaseInfo

ncRNA ID	novel_zma_miR3167
Species	Zea mays
Class	miRNA
Genome position	Chr2:81390929-81391049 [+]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	1 - GGAUUGAUUUGGUGACAAGGGGAU - 24
Stem-loop(if miRNA)	--  AU            AAG     C  AU             A              AA   GG  UGAUUUGGUGAC   GGGAU CC  GAGGAUUGGAGGG AUUGAGGGGGAAAU  A   ||  ||||||||||||   ||||| ||  ||||||||||||| ||||||||||||||   CC  ACUAAACCACUG   CCCUA GG  CUCCUAACCUUCC UAAUUCUCCCUUUA  C UU  CG            -GG     U  CC             C              AU
Stem-loop sequence	GGAUUGAUUUGGUGACAAGGGGAUCCCAUGAGGAUUGGAGGGAAUUGAGGGGGAAAUAAACUAAUUUCCCUCUUAAUCCCUUCCAAUCCUCCCGGUAUCCCGGGUCACCAAAUCAGCCCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ098881.1	ncRNA:24   UAGGGGAACAGUGGUUUAGUUAGG   1   |||||||||||||||||||||*|| targets:107   AUCCCCUUGUCACCAAAUCAACCC   130 Target Full Sequence	1.5	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
EZ106816.1	ncRNA:24   UAGGGGAACAGUGGUUUAGUUAGG   1   |||||||||||||||||||||*|| targets:301   AUCCCCUUGUCACCAAAUCAACCC   324 Target Full Sequence	1.5	TSA: Zea mays contig42474, mRNA sequence	NA	coding protein	psRNATarget
EU973567.1	ncRNA:24   UAGGGGAACAGUGGUUUAGUUAGG   1   |||||||||||||||||||||*|| targets:115   AUCCCCUUGUCACCAAAUCAACCC   138 Target Full Sequence	1.5	Zea mays clone 401029 mRNA sequence	NA	coding protein	psRNATarget
EU953234.1	ncRNA:24   UAGGGGAACAGUGGUUUAGUUAGG   1   |||||||||||||||||||||*|| targets:1500   AUCCCCUUGUCACCAAAUCAACCC   1523 Target Full Sequence	1.5	Zea mays clone 1392496 mRNA sequence	NA	coding protein	psRNATarget
EZ082583.1	ncRNA:24   UAGGGGAACAGUGGUUUAGUUAGG   1   ||||=|||||||=||||||||||* targets:19   AUCCUCUUGUCAUCAAAUCAAUCA   42 Target Full Sequence	2.5	TSA: Zea mays contig18226, mRNA sequence	NA	coding protein	psRNATarget
EU945757.1	ncRNA:24   UAGGGGAACAGUGGUUUAGUUAGG   1   ||===||*||||||||||||=||| targets:68   AUUUUCUGGUCACCAAAUCAGUCC   91 Target Full Sequence	2.5	Zea mays clone 284734 mRNA sequence	NA	coding protein	psRNATarget
EU969052.1	ncRNA:24   UAGGGGAACAGUGGUUUAGUUAGG   1   ||||*|||||=||||||||||*|| targets:1597   AUCCACUUGUUACCAAAUCAACCC   1620 Target Full Sequence	2.5	Zea mays clone 325815 mRNA sequence	NA	coding protein	psRNATarget
NM_001147318.1	ncRNA:24   UAGGGGAACAGUGGUUUAGUUAGG   1   ||||*|||*||||||||||||*|| targets:1653   AUCCACUUAUCACCAAAUCAACCC   1676 Target Full Sequence	2.5	Zea mays uncharacterized LOC100272865 (LOC100272865), mRNA	NA	coding protein	psRNATarget
BT039623.1	ncRNA:24   UAGGGGAACAGUGGUUUAGUUAGG   1   ||||*|||*||||||||||||*|| targets:1653   AUCCACUUAUCACCAAAUCAACCC   1676 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0035A18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020537910.1	ncRNA:24   UAGGGGAACAGUGGUUUAGUUAGG   1   ||||*|||*||||||||||||*|| targets:1761   AUCCACUUAUCACCAAAUCAACCC   1784 Target Full Sequence	2.5	PREDICTED: Zea mays cytochrome P450 87A3-like (LOC109939182), mRNA	NA	coding protein	psRNATarget