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BaseInfo

ncRNA ID	novel_zma_miR3166
Species	Zea mays
Class	miRNA
Genome position	Chr7:123071131-123071229 [-]
Reference genome	RefGen_v4
Source	SRR1583944;SRR1583943
Length	24
Mature sequence(if miRNA)	1 - ACACUCGGUAAAAUAAAACACUCG - 24
Stem-loop(if miRNA)	--     CA    CU              UUUU  -              A   AGUGU  UAUU  UUGCCGAGUGUUUU    CG GGCACUCGGCAAAG A   |||||  ||||  ||||||||||||||    || |||||||||||||| G   UCACA  AUAA  AAUGGCUCACAAAA    GC CUGUGAGCCGUUUC C GC     AA    --              -CAC  A              U
Stem-loop sequence	AGUGUCAUAUUCUUUGCCGAGUGUUUUUUUUCGGGCACUCGGCAAAGAAGCUCUUUGCCGAGUGUCACGCACAAAACACUCGGUAAAAUAAAACACUCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT055423.1	ncRNA:24   GCUCACAAAAUAAAAUGGCUCACA   1   ||||||||||*||||||||||*|| targets:95   CGAGUGUUUUCUUUUACCGAGGGU   118 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165647.1	ncRNA:24   GCUCACAAAAUAAAAUGGCUCACA   1   ||||||||||*||||||||||*|| targets:95   CGAGUGUUUUCUUUUACCGAGGGU   118 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   GCUCACAAAAUAAAAUGGCUCACA   1   ||||||||||*||||||||||*|| targets:2114   CGAGUGUUUUCUUUUACCGAGGGU   2137 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   GCUCACAAAAUAAAAUGGCUCACA   1   ||||||||||*||||||||||*|| targets:2114   CGAGUGUUUUCUUUUACCGAGGGU   2137 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
XM_020543430.1	ncRNA:24   GCUCACAAAAUAAAAUGGCUCACA   1   ||||*|||||*||||||||||*|| targets:1128   CGAGGGUUUUCUUUUACCGAGGGU   1151 Target Full Sequence	2.5	PREDICTED: Zea mays protein enabled homolog (LOC103636633), mRNA	NA	coding protein	psRNATarget