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BaseInfo

ncRNA ID	novel_zma_miR3164
Species	Zea mays
Class	miRNA
Genome position	Chr10:72925874-72925957 [-]
Reference genome	RefGen_v4
Source	SRR2089715;SRR2287163;SRR1997865;SRR5451003;SRR5451004;SRR2089699;SRR2089708
Length	21
Mature sequence(if miRNA)	64 - CAGAAGGGGAUUGGAGGGGUU - 84
Stem-loop(if miRNA)	--      G            U       G     U   CAU   CAGAAG GGAUUGGAGGGG UUAAAUC UCUCC AGU   U   |||||| |||||||||||| ||||||| ||||| |||   GUCUUC CCUAACCUCCUC AAUUUAG GGAGG UCA   U AG      A            U       G     U   UUU
Stem-loop sequence	CAGAAGGGGAUUGGAGGGGUUUAAAUCGUCUCCUAGUCAUUUUUUACUUGGAGGGGAUUUAAUCUCCUCCAAUCCACUUCUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020548160.1	ncRNA:21   UUGGGGAGGUUAGGGGAAGAC   1   ||||=|||=|||||||||||| targets:4797   AACCUCUCUAAUCCCCUUCUG   4817 Target Full Sequence	2.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670752.2	ncRNA:21   UUGGGGAGGUUAGGGGAAGAC   1   ||||=|||=|||||||||||| targets:5024   AACCUCUCUAAUCCCCUUCUG   5044 Target Full Sequence	2.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163489.1	ncRNA:21   UUGGGGAGGUUAGGGGAAGAC   1   ||||||||||||||||*|||| targets:83   AACCCCUCCAAUCCCCAUCUG   103 Target Full Sequence	1.5	Sequence 1153 from Patent EP2559767	NA	coding protein	psRNATarget
HI403028.1	ncRNA:21   UUGGGGAGGUUAGGGGAAGAC   1   ||||||||||||||||*|||| targets:83   AACCCCUCCAAUCCCCAUCUG   103 Target Full Sequence	1.5	Sequence 1153 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235158.1	ncRNA:21   UUGGGGAGGUUAGGGGAAGAC   1   ||||||||||||||||*|||| targets:83   AACCCCUCCAAUCCCCAUCUG   103 Target Full Sequence	1.5	Sequence 1153 from Patent EP2985353	NA	coding protein	psRNATarget
JB167257.1	ncRNA:21   UUGGGGAGGUUAGGGGAAGAC   1   ||||||||||||*|||||||| targets:96   AACCCCUCCAAUACCCUUCUG   116 Target Full Sequence	1.5	Sequence 4921 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238926.1	ncRNA:21   UUGGGGAGGUUAGGGGAAGAC   1   ||||||||||||*|||||||| targets:96   AACCCCUCCAAUACCCUUCUG   116 Target Full Sequence	1.5	Sequence 4921 from Patent EP2985353	NA	coding protein	psRNATarget
HI406796.1	ncRNA:21   UUGGGGAGGUUAGGGGAAGAC   1   ||||||||||||*|||||||| targets:96   AACCCCUCCAAUACCCUUCUG   116 Target Full Sequence	1.5	Sequence 4921 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020540164.1	ncRNA:21   UUGGGGAGGUUAGGGGAAGAC   1   ||||||||||||||||*|||| targets:1603   AACCCCUCCAAUCCCCCUCUG   1623 Target Full Sequence	1.5	PREDICTED: Zea mays Cysteine-rich repeat secretory protein 3 (LOC107521955), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ049235.1	ncRNA:20   UGGGGAGGUUAGGGGAAGAC   1   *|||||=||||||||||||| targets:1   UCCCCUUCAAUCCCCUUCUG   20 Target Full Sequence	1.0	TSA: Zea mays contig50353, mRNA sequence	NA	coding protein	psRNATarget