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BaseInfo

ncRNA ID	novel_zma_miR3160
Species	Zea mays
Class	miRNA
Genome position	Chr10:76016410-76016454 [-]
Reference genome	RefGen_v4
Source	SRR2089715
Length	23
Mature sequence(if miRNA)	1 - UCCGGUGAAUUGUAGCGGAGCGG - 23
Stem-loop(if miRNA)	--         G  ---      A   GCUCUGUUG CA   CACCGG C   ||||||||| ||   |||||| A   CGAGGCGAU GU   GUGGCC G GG         -  UAA      U
Stem-loop sequence	GCUCUGUUGGCACACCGGACAGUCCGGUGAAUUGUAGCGGAGCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB170309.1	ncRNA:23   GGCGAGGCGAUGUUAAGUGGCCU   1   |||||||||||=||||||||||| targets:79   CCGCUCCGCUAUAAUUCACCGGA   101 Target Full Sequence	1.5	Sequence 7973 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241978.1	ncRNA:23   GGCGAGGCGAUGUUAAGUGGCCU   1   |||||||||||=||||||||||| targets:79   CCGCUCCGCUAUAAUUCACCGGA   101 Target Full Sequence	1.5	Sequence 7973 from Patent EP2985353	NA	coding protein	psRNATarget
HI409848.1	ncRNA:23   GGCGAGGCGAUGUUAAGUGGCCU   1   |||||||||||=||||||||||| targets:79   CCGCUCCGCUAUAAUUCACCGGA   101 Target Full Sequence	1.5	Sequence 7973 from Patent EP2074227	NA	coding protein	psRNATarget
BT042818.1	ncRNA:23   GGCGAGGCGAUGUUAAGUGGCCU   1   ||||||=||||=||||||||||| targets:599   CCGCUCUGCUAUAAUUCACCGGA   621 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0047A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT069634.1	ncRNA:23   GGCGAGGCGAUGUUAAGUGGCCU   1   |=|||||||||=||||||||||| targets:691   CUGCUCCGCUAUAAUUCACCGGA   713 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds	NA	coding protein	psRNATarget
BT069634.1	ncRNA:23   GGCGAGGCGAUGUUAAGUGGCCU   1   *|*||||||||=||||||||||| targets:585   GCACUCCGCUAUAAUUCACCGGA   607 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176828.1	ncRNA:23   GGCGAGGCGAUGUUAAGUGGCCU   1   |=|||||||||=||||||||||| targets:691   CUGCUCCGCUAUAAUUCACCGGA   713 Target Full Sequence	1.5	Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA	NA	coding protein	psRNATarget
NM_001176828.1	ncRNA:23   GGCGAGGCGAUGUUAAGUGGCCU   1   *|*||||||||=||||||||||| targets:585   GCACUCCGCUAUAAUUCACCGGA   607 Target Full Sequence	1.5	Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA	NA	coding protein	psRNATarget
EU970212.1	ncRNA:23   GGCGAGGCGAUGUUAAGUGGCCU   1   *||||||||||=||||||||||| targets:471   GCGCUCCGCUAUAAUUCACCGGA   493 Target Full Sequence	1.5	Zea mays clone 342257 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
JB170161.1	ncRNA:23   GGCGAGGCGAUGUUAAGUGGCCU   1   *|*|||*||||=||||||||||| targets:54   GCACUCAGCUAUAAUUCACCGGA   76 Target Full Sequence	2.5	Sequence 7825 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241830.1	ncRNA:23   GGCGAGGCGAUGUUAAGUGGCCU   1   *|*|||*||||=||||||||||| targets:54   GCACUCAGCUAUAAUUCACCGGA   76 Target Full Sequence	2.5	Sequence 7825 from Patent EP2985353	NA	coding protein	psRNATarget
HI409700.1	ncRNA:23   GGCGAGGCGAUGUUAAGUGGCCU   1   *|*|||*||||=||||||||||| targets:54   GCACUCAGCUAUAAUUCACCGGA   76 Target Full Sequence	2.5	Sequence 7825 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008650945.1	ncRNA:23   GGCGAGGCGAUGUUAAGUGGCCU   1   *||||||||||=||||||||||| targets:836   GCGCUCCGCUAUAAUUCACCGGA   858 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103629851 (LOC103629851), mRNA	NA	coding protein	psRNATarget
EU952069.1	ncRNA:23   GGCGAGGCGAUGUUAAGUGGCCU   1   *||||||||||=||||||||||| targets:844   GCGCUCCGCUAUAAUUCACCGGA   866 Target Full Sequence	1.5	Zea mays clone 1155789 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ078322.1	ncRNA:23   GGCGAGGCGAUGUUAAGUGGCCU   1   |*|||||||||=||||||||||| targets:15   CAGCUCCGCUAUAAUUCACCGGA   37 Target Full Sequence	1.5	TSA: Zea mays contig13961, mRNA sequence	NA	coding protein	psRNATarget
XM_020541939.1	ncRNA:23   GGCGAGGCGAUGUUAAGUGGCCU   1   *=|||||||||=||||||||||| targets:1025   AUGCUCCGCUAUAAUUCACCGGA   1047 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100272534 (LOC100272534), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541938.1	ncRNA:23   GGCGAGGCGAUGUUAAGUGGCCU   1   *=|||||||||=||||||||||| targets:1038   AUGCUCCGCUAUAAUUCACCGGA   1060 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100272534 (LOC100272534), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT064671.1	ncRNA:23   GGCGAGGCGAUGUUAAGUGGCCU   1   ||*||||||||=||||||||||| targets:1075   CCACUCCGCUAUAAUUCACCGGA   1097 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0008J22 mRNA, complete cds	NA	coding protein	psRNATarget
EU947420.1	ncRNA:23   GGCGAGGCGAUGUUAAGUGGCCU   1   =|*||||||||=||||||||||| targets:314   UCACUCCGCUAUAAUUCACCGGA   336 Target Full Sequence	1.5	Zea mays clone 342805 mRNA sequence	NA	coding protein	psRNATarget
BT069667.1	ncRNA:23   GGCGAGGCGAUGUUAAGUGGCCU   1   =||-|||||||=||||||||||| targets:1483   UCG-UCCGCUAUAAUUCACCGGA   1504 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0206D24 mRNA, complete cds	NA	coding protein	psRNATarget
BT069667.1	ncRNA:23   GGC-GAGGCGAUGUUAAGUGGCCU   1   *||-|||*||||=||||||||||| targets:1375   GCGACUCGGCUAUAAUUCACCGGA   1398 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206D24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176839.1	ncRNA:23   GGCGAGGCGAUGUUAAGUGGCCU   1   =||-|||||||=||||||||||| targets:1483   UCG-UCCGCUAUAAUUCACCGGA   1504 Target Full Sequence	1.5	Zea mays uncharacterized LOC100384275 (LOC100384275), mRNA	NA	coding protein	psRNATarget
NM_001176839.1	ncRNA:23   GGC-GAGGCGAUGUUAAGUGGCCU   1   *||-|||*||||=||||||||||| targets:1375   GCGACUCGGCUAUAAUUCACCGGA   1398 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384275 (LOC100384275), mRNA	NA	coding protein	psRNATarget
EZ092215.1	ncRNA:23   GGCGAGGCGAUGUUAAGUGGCCU   1   |*|||||*|||=||||||||||| targets:14   CAGCUCCUCUAUAAUUCACCGGA   36 Target Full Sequence	2.5	TSA: Zea mays contig27864, mRNA sequence	NA	coding protein	psRNATarget
EU948808.1	ncRNA:23   GGC-GAGGCGAUGUUAAGUGGCCU   1   *||-|||*||||=||||||||||| targets:389   GCGACUCGGCUAUAAUUCACCGGA   412 Target Full Sequence	2.5	Zea mays clone 385792 mRNA sequence	NA	coding protein	psRNATarget