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BaseInfo

ncRNA ID	osa-miR812j
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:19806333-19806629 [+]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	200 - AAGACGGAUGAUUAAAGUUGGACA - 223
Stem-loop(if miRNA)	AGA U   ---   ------        --G         UC       C                          U              UG            --       UUU   AAAAACUAAAAAACACA   CACGCAUAAACUACUAU    G GCA   UCC      UUGGUCUU   GAUAGUACU  CUUUGUC CAAAAUAAGCGUAGCCAUGAGUUUUC UGUCCAACUUUAAU  UUCGUCUUAUUU  AAUUUUU   UGA                 AGU                 U    | |||   |||      ||||||||   |||||||||  ||||||| |||||||||||||||||||||||||| ||||||||||||||  ||||||||||||  |||||||   |||                 |||                 C    C CGU   AGG      GACUAGAA   UUAUCAUGA  GAGGCAG GUUUUAUUUGCGUCGGUACUCAAAGG ACAGGUUGAAAUUA  AGGCAGAAUAAA  UUAAAAA   ACU                 ACA                 A --A -   AAA   UUGAUC        AGG         GA       U                          C              GU            CU       CAU   ----AAUCAUAAAAAUA   AUAAUCUAAUAUUUUGU
Stem-loop sequence	AGAGUGCAUCCUUGGUCUUGGAUAGUACUUCCUUUGUCCCAAAAUAAGCGUAGCCAUGAGUUUUCUUGUCCAACUUUAAUUGUUCGUCUUAUUUAAUUUUUUUUUGAAAAAACUAAAAAACACAAGUCACGCAUAAACUACUAUUCAUGUUUUAUAAUCUAAUAACAAUAAAAAUACUAAUCAUACAAAAAUUUCAAAUAAGACGGAUGAUUAAAGUUGGACACGGAAACUCAUGGCUGCGUUUAUUUUGUGACGGAGAGAGUACUAUUGGAAAGAUCAGCUAGUUGGAAAAUGCCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK070816.1	ncRNA:24   ACAGGUUGAAAUUAGUAGGCAGAA   1   ||*||||||||||||=|||||||| targets:1550   UGCCCAACUUUAAUCGUCCGUCUU   1573 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023066M01, full insert sequence	NA	coding protein	psRNATarget
AK110633.1	ncRNA:24   ACAGGUUGAAAUUAGUAGGCAGAA   1   *|*||||||||=|||||||||||| targets:658   CGCCCAACUUUGAUCAUCCGUCUU   681 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-169-C01, full insert sequence	NA	coding protein	psRNATarget
AK064607.1	ncRNA:24   ACAGGUUGAAAUUAGUAGGCAGAA   1   ***|=||||||=|||||||||||| targets:1722   CAACUAACUUUGAUCAUCCGUCUU   1745 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-113-A06, full insert sequence	NA	coding protein	psRNATarget
XM_015795853.1	ncRNA:24   ACA--GGUUGAAAUUAGUAGGCAGAA   1   *||--==||||||=|||||||||||| targets:392   CGUACUUAACUUUGAUCAUCCGUCUU   417 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107282086 (LOC107282086), transcript variant X3, mRNA	uncharacterized LOC107282086(LOC107282086)	coding protein	psRNATarget

Reference

1	PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"; Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C; Genome Res. 18:1456-1465(2008).