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BaseInfo

ncRNA ID	novel_zma_miR3159
Species	Zea mays
Class	miRNA
Genome position	Chr7:137693221-137693271 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	1 - GGUCUCUUCUUAAUAUAAUACUAG - 24
Stem-loop(if miRNA)	--      -     - UC      AU   GGUAUU UAUUG G  GGGAUC  G   |||||| ||||| |  ||||||  U   UCAUAA AUAAU C  CUCUGG  U GA      U     U UU      CC
Stem-loop sequence	GGUAUUUAUUGGUCGGGAUCAUGUUCCGGUCUCUUCUUAAUAUAAUACUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT068375.1	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   |||||||||||||||||||||||| targets:387   CUAGUAUUAUAUUAAGAAGAGACC   410 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0146H13 mRNA, complete cds	NA	coding protein	psRNATarget
BT086363.2	ncRNA:24   GA--UCAUAAUAUAAUUCUUCUCUGG   1   ||--=||||||||||||||||||||| targets:1021   CUCCGGUAUUAUAUUAAGAAGAGACC   1046 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0156O19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546942.1	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   ||=||||||||||||*|||||||| targets:1349   CUGGUAUUAUAUUAAUAAGAGACC   1372 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943549 (LOC109943549), mRNA	NA	coding protein	psRNATarget
BT063606.1	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   |*=||||||||||||||||||||| targets:637   CCGGUAUUAUAUUAAGAAGAGACC   660 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0085F04 mRNA, complete cds	NA	coding protein	psRNATarget
BT018647.1	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   |*=||||||||||||||||||||| targets:429   CCGGUAUUAUAUUAAGAAGAGACC   452 Target Full Sequence	0.0	Zea mays clone EL01N0505E03.d mRNA sequence	NA	coding protein	psRNATarget
XM_008659141.2	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   |*=||||||||||||||||||||| targets:1123   CCGGUAUUAUAUUAAGAAGAGACC   1146 Target Full Sequence	0.0	PREDICTED: Zea mays hypothetical protein (LOC103636817), mRNA	NA	coding protein	psRNATarget
AY103769.1	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   |*=||||||||||||||||||||| targets:701   CCGGUAUUAUAUUAAGAAGAGACC   724 Target Full Sequence	0.0	Zea mays PCO131956 mRNA sequence	NA	coding protein	psRNATarget
XM_008655015.2	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   |*=||||||||||=|||||||||| targets:525   CCGGUAUUAUAUUGAGAAGAGACC   548 Target Full Sequence	1.5	PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.3 (LOC103633295), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU956322.1	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   |*=||||||||||||||||||||* targets:59   CCGGUAUUAUAUUAAGAAGAGACA   82 Target Full Sequence	1.0	Zea mays clone 1560797 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553435.1	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   |*=|||||||||||||||||||== targets:1559   CCGGUAUUAUAUUAAGAAGAGAUU   1582 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100286139 (si606063d04), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT066496.1	ncRNA:24   GA-UCAUAAUAUAAUUCUUCUCUGG   1   ||-=|||||||||||||||*||||| targets:1698   CUCGGUAUUAUAUUAAGAAAAGACC   1722 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0013G06 mRNA, complete cds	NA	coding protein	psRNATarget
AY111080.1	ncRNA:24   GA-UCAUAAUAUAAUUCUUCUCUGG   1   ||-|*|||||||||||||||||||= targets:615   CUCAAUAUUAUAUUAAGAAGAGACU   639 Target Full Sequence	1.0	Zea mays CL2817_2 mRNA sequence	NA	coding protein	psRNATarget
XM_020549584.1	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   |*=||||||||||||*|||||||* targets:534   CCGGUAUUAUAUUAAAAAGAGACA   557 Target Full Sequence	2.5	PREDICTED: Zea mays O-fucosyltransferase family protein (LOC100273815), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008660452.2	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   |*=||||*=||||||||||||||= targets:1522   CCGGUAUAGUAUUAAGAAGAGACU   1545 Target Full Sequence	3.0	PREDICTED: Zea mays 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (cl27880_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550560.1	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   **||*||||||||||*|||||||| targets:3552   GAAGGAUUAUAUUAAAAAGAGACC   3575 Target Full Sequence	1.5	PREDICTED: Zea mays chromatin modification-related protein EAF1 B-like (LOC103652593), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020550562.1	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   **||*||||||||||*|||||||| targets:3577   GAAGGAUUAUAUUAAAAAGAGACC   3600 Target Full Sequence	1.5	PREDICTED: Zea mays chromatin modification-related protein EAF1 B-like (LOC103652593), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020550561.1	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   **||*||||||||||*|||||||| targets:3549   GCAGGAUUAUAUUAAAAAGAGACC   3572 Target Full Sequence	1.5	PREDICTED: Zea mays chromatin modification-related protein EAF1 B-like (LOC103652593), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020550565.1	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   **||*||||||||||*|||||||| targets:3549   GCAGGAUUAUAUUAAAAAGAGACC   3572 Target Full Sequence	1.5	PREDICTED: Zea mays chromatin modification-related protein EAF1 B-like (LOC103652593), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020550563.1	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   **||*||||||||||*|||||||| targets:3483   GAAGGAUUAUAUUAAAAAGAGACC   3506 Target Full Sequence	1.5	PREDICTED: Zea mays chromatin modification-related protein EAF1 B-like (LOC103652593), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020550567.1	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   **||*||||||||||*|||||||| targets:3474   GAAGGAUUAUAUUAAAAAGAGACC   3497 Target Full Sequence	1.5	PREDICTED: Zea mays chromatin modification-related protein EAF1 B-like (LOC103652593), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020550558.1	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   **||*||||||||||*|||||||| targets:3426   GAAGGAUUAUAUUAAAAAGAGACC   3449 Target Full Sequence	1.5	PREDICTED: Zea mays chromatin modification-related protein EAF1 B-like (LOC103652593), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550559.1	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   **||*||||||||||*|||||||| targets:3386   GAAGGAUUAUAUUAAAAAGAGACC   3409 Target Full Sequence	1.5	PREDICTED: Zea mays chromatin modification-related protein EAF1 B-like (LOC103652593), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550566.1	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   **||*||||||||||*|||||||| targets:3357   GCAGGAUUAUAUUAAAAAGAGACC   3380 Target Full Sequence	1.5	PREDICTED: Zea mays chromatin modification-related protein EAF1 B-like (LOC103652593), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020550564.1	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   **||*||||||||||*|||||||| targets:3347   GAAGGAUUAUAUUAAAAAGAGACC   3370 Target Full Sequence	1.5	PREDICTED: Zea mays chromatin modification-related protein EAF1 B-like (LOC103652593), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008645884.2	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   |*=*|||*|||||||||||||||| targets:1343   CCGAUAUAAUAUUAAGAAGAGACC   1366 Target Full Sequence	1.0	PREDICTED: Zea mays Rhomboid-like protein 15 (pco089119), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008677164.2	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   **||*||||||||||*|||||||* targets:3542   GAAGGAUUAUAUUAAAAAGAGACA   3565 Target Full Sequence	2.5	PREDICTED: Zea mays Chromatin modification-related protein EAF1 B (LOC103651525), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008677168.2	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   **||*||||||||||*|||||||* targets:3565   GAAGGAUUAUAUUAAAAAGAGACA   3588 Target Full Sequence	2.5	PREDICTED: Zea mays Chromatin modification-related protein EAF1 B (LOC103651525), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008677167.2	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   **||*||||||||||*|||||||* targets:3491   GAAGGAUUAUAUUAAAAAGAGACA   3514 Target Full Sequence	2.5	PREDICTED: Zea mays Chromatin modification-related protein EAF1 B (LOC103651525), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020550556.1	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   **||*||||||||||*|||||||* targets:3483   GAAGGAUUAUAUUAAAAAGAGACA   3506 Target Full Sequence	2.5	PREDICTED: Zea mays Chromatin modification-related protein EAF1 B (LOC103651525), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008677165.2	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   **||*||||||||||*|||||||* targets:3360   GAAGGAUUAUAUUAAAAAGAGACA   3383 Target Full Sequence	2.5	PREDICTED: Zea mays Chromatin modification-related protein EAF1 B (LOC103651525), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550557.1	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   **||*||||||||||*|||||||* targets:3317   GAAGGAUUAUAUUAAAAAGAGACA   3340 Target Full Sequence	2.5	PREDICTED: Zea mays Chromatin modification-related protein EAF1 B (LOC103651525), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008677166.2	ncRNA:24   GAUCAUAAUAUAAUUCUUCUCUGG   1   **||*||||||||||*|||||||* targets:3285   GAAGGAUUAUAUUAAAAAGAGACA   3308 Target Full Sequence	2.5	PREDICTED: Zea mays Chromatin modification-related protein EAF1 B (LOC103651525), transcript variant X3, mRNA	NA	coding protein	psRNATarget