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BaseInfo

ncRNA ID	novel_zma_miR3158
Species	Zea mays
Class	miRNA
Genome position	Chr2:38436890-38437009 [+]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	1 - GGGUUGAUUUGGUGACAAGAGGAU - 24
Stem-loop(if miRNA)	--                 A A      UA        -AAA    A       C     UA   GGGUUGAUUUGGUGACA G GGAUCA  GAAGGAUU    GGUG UUGAGGG GAAAU  G   ||||||||||||||||| | ||||||  ||||||||    |||| ||||||| |||||   CUCAACUAAACCACUGU C CCUAGU  CUUCCUAA    CCGC AACUCCC CUUUA  U AU                 A -      GC        CCUC    -       -     UU
Stem-loop sequence	GGGUUGAUUUGGUGACAAGAGGAUCAUAGAAGGAUUAAAGGUGAUUGAGGGCGAAAUUAGUUUAUUUCCCCUCAACGCCCUCCAAUCCUUCCGUGAUCCCAUGUCACCAAAUCAACUCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ098881.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||*||||||||||||||||||| targets:107   AUCCCCUUGUCACCAAAUCAACCC   130 Target Full Sequence	0.0	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
EZ106816.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||*||||||||||||||||||| targets:301   AUCCCCUUGUCACCAAAUCAACCC   324 Target Full Sequence	0.0	TSA: Zea mays contig42474, mRNA sequence	NA	coding protein	psRNATarget
EU973567.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||*||||||||||||||||||| targets:115   AUCCCCUUGUCACCAAAUCAACCC   138 Target Full Sequence	0.0	Zea mays clone 401029 mRNA sequence	NA	coding protein	psRNATarget
EU953234.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||*||||||||||||||||||| targets:1500   AUCCCCUUGUCACCAAAUCAACCC   1523 Target Full Sequence	0.0	Zea mays clone 1392496 mRNA sequence	NA	coding protein	psRNATarget
JB170124.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||*|||||||||||||||=||| targets:97   AUCCCCUUGUCACCAAAUCAGCCC   120 Target Full Sequence	1.5	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||*|||||||||||||||=||| targets:97   AUCCCCUUGUCACCAAAUCAGCCC   120 Target Full Sequence	1.5	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||*|||||||||||||||=||| targets:97   AUCCCCUUGUCACCAAAUCAGCCC   120 Target Full Sequence	1.5	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||*|||||||||||||||=||| targets:851   AUCCCCUUGUCACCAAAUCAGCCC   874 Target Full Sequence	1.5	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||*|||||||||||||||=||| targets:890   AUCCCCUUGUCACCAAAUCAGCCC   913 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||*|||||||||||||||=||| targets:895   AUCCCCUUGUCACCAAAUCAGCCC   918 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||*|||||||||||||||=||| targets:895   AUCCCCUUGUCACCAAAUCAGCCC   918 Target Full Sequence	1.5	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
EU969052.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||*|||||=||||||||||||| targets:1597   AUCCACUUGUUACCAAAUCAACCC   1620 Target Full Sequence	1.0	Zea mays clone 325815 mRNA sequence	NA	coding protein	psRNATarget
XM_020539542.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||*|||||||||||||||=||| targets:161   AUCCACUUGUCACCAAAUCAGCCC   184 Target Full Sequence	1.5	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008651348.2	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||*|||||||||||||||=||| targets:161   AUCCACUUGUCACCAAAUCAGCCC   184 Target Full Sequence	1.5	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020539541.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||*|||||||||||||||=||| targets:161   AUCCACUUGUCACCAAAUCAGCCC   184 Target Full Sequence	1.5	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X6, mRNA	NA	coding protein	psRNATarget
EU945995.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||*|||||||||||||*||||| targets:404   AUCCCCUUGUCACCAAAUGAACCC   427 Target Full Sequence	1.5	Zea mays clone 293035 mRNA sequence	NA	coding protein	psRNATarget
NM_001147318.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||*|||*||||||||||||||| targets:1653   AUCCACUUAUCACCAAAUCAACCC   1676 Target Full Sequence	1.0	Zea mays uncharacterized LOC100272865 (LOC100272865), mRNA	NA	coding protein	psRNATarget
BT039623.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||*|||*||||||||||||||| targets:1653   AUCCACUUAUCACCAAAUCAACCC   1676 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0035A18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020537910.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||*|||*||||||||||||||| targets:1761   AUCCACUUAUCACCAAAUCAACCC   1784 Target Full Sequence	1.0	PREDICTED: Zea mays cytochrome P450 87A3-like (LOC109939182), mRNA	NA	coding protein	psRNATarget
XM_020538633.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||-|||||||||||||*||||| targets:3805   AUCC-CUUGUCACCAAAUGAACCC   3827 Target Full Sequence	1.5	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008647808.2	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||-|||||||||||||*||||| targets:3918   AUCC-CUUGUCACCAAAUGAACCC   3940 Target Full Sequence	1.5	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020538630.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||-|||||||||||||*||||| targets:3957   AUCC-CUUGUCACCAAAUGAACCC   3979 Target Full Sequence	1.5	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020538631.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||-|||||||||||||*||||| targets:4705   AUCC-CUUGUCACCAAAUGAACCC   4727 Target Full Sequence	1.5	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020538632.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||-|||||||||||||*||||| targets:4706   AUCC-CUUGUCACCAAAUGAACCC   4728 Target Full Sequence	1.5	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X4, mRNA	NA	coding protein	psRNATarget
NM_001350089.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||-|||||||||||||*||||| targets:5768   AUCC-CUUGUCACCAAAUGAACCC   5790 Target Full Sequence	1.5	Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), mRNA	NA	coding protein	psRNATarget
JB163906.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||-||*||||||||||||=||| targets:61   AUCC-CUGGUCACCAAAUCAGCCC   83 Target Full Sequence	2.5	Sequence 1570 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235575.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||-||*||||||||||||=||| targets:61   AUCC-CUGGUCACCAAAUCAGCCC   83 Target Full Sequence	2.5	Sequence 1570 from Patent EP2985353	NA	coding protein	psRNATarget
HI403445.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||-||*||||||||||||=||| targets:61   AUCC-CUGGUCACCAAAUCAGCCC   83 Target Full Sequence	2.5	Sequence 1570 from Patent EP2074227	NA	coding protein	psRNATarget
JB163954.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||-||*||||||||||||||=| targets:62   AUCC-CUGGUCACCAAAUCAACUC   84 Target Full Sequence	2.5	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||-||*||||||||||||||=| targets:62   AUCC-CUGGUCACCAAAUCAACUC   84 Target Full Sequence	2.5	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
HI403493.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||-||*||||||||||||||=| targets:62   AUCC-CUGGUCACCAAAUCAACUC   84 Target Full Sequence	2.5	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
JB163762.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||-||*||||||||||||=||| targets:96   AUCC-CUGGUCACCAAAUCAGCCC   118 Target Full Sequence	2.5	Sequence 1426 from Patent EP2559767	NA	coding protein	psRNATarget
HI403301.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||-||*||||||||||||=||| targets:96   AUCC-CUGGUCACCAAAUCAGCCC   118 Target Full Sequence	2.5	Sequence 1426 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235431.1	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||-||*||||||||||||=||| targets:96   AUCC-CUGGUCACCAAAUCAGCCC   118 Target Full Sequence	2.5	Sequence 1426 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008675221.2	ncRNA:24   UAGGAGAACAGUGGUUUAGUUGGG   1   ||||-||*||||||||||||=||| targets:180   AUCC-CUGGUCACCAAAUCAGCCC   202 Target Full Sequence	2.5	PREDICTED: Zea mays gibberellin responsive 1 (gar1), transcript variant X2, mRNA	NA	coding protein	psRNATarget