Search result

BaseInfo

ncRNA ID	novel_zma_miR3156
Species	Zea mays
Class	miRNA
Genome position	Chr2:106983078-106983135 [-]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	35 - GAUUGAAGGGGAUUGAGGUGGAAA - 58
Stem-loop(if miRNA)	--               AG U      GA   GAUUGAAGGGGAUUG  G GGAAAU  A   |||||||||||||||  | ||||||   CUAACUUCCCCUAAC  C CCUUUA  C CC               CU U      AU
Stem-loop sequence	GAUUGAAGGGGAUUGAGGUGGAAAUGAACUAAUUUCCUCUCCAAUCCCCUUCAAUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU942844.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   |||||||||||||||=|||||||| targets:193   UUUCCACCUCAAUCCUCUUCAAUC   216 Target Full Sequence	1.5	Zea mays clone 1540330 mRNA sequence	NA	coding protein	psRNATarget
BT038305.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   ||||||=|||||||||=||||||| targets:609   UUUCCAUCUCAAUCCCUUUCAAUC   632 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0224P03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020541843.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   ||||||=|||||||||=||||||| targets:1614   UUUCCAUCUCAAUCCCUUUCAAUC   1637 Target Full Sequence	2.5	PREDICTED: Zea mays putative actin family protein (LOC100191561), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   |||||*|||=|||||||||||||| targets:65   UUUCCCCCUUAAUCCCCUUCAAUC   88 Target Full Sequence	2.0	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   |||||*|||=|||||||||||||| targets:65   UUUCCCCCUUAAUCCCCUUCAAUC   88 Target Full Sequence	2.0	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
JB170124.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   |||||*|||=|||||||||||||| targets:65   UUUCCCCCUUAAUCCCCUUCAAUC   88 Target Full Sequence	2.0	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
EZ055746.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   |||=||||||||||||||*||||| targets:73   UUUUCACCUCAAUCCCCUCCAAUC   96 Target Full Sequence	1.5	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   |||=||||||||||||||*||||| targets:39   UUUUCACCUCAAUCCCCUCCAAUC   62 Target Full Sequence	1.5	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   |||||*|||=|||||||||||||| targets:819   UUUCCCCCUUAAUCCCCUUCAAUC   842 Target Full Sequence	2.0	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   |||||*|||=|||||||||||||| targets:858   UUUCCCCCUUAAUCCCCUUCAAUC   881 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   |||||*|||=|||||||||||||| targets:863   UUUCCCCCUUAAUCCCCUUCAAUC   886 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   |||||*|||=|||||||||||||| targets:863   UUUCCCCCUUAAUCCCCUUCAAUC   886 Target Full Sequence	2.0	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
NM_001317055.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   ||||=*|||||=|||||||||||| targets:1496   UUUCUCCCUCAGUCCCCUUCAAUC   1519 Target Full Sequence	2.5	Zea mays Membrane metalloprotease ARASP chloroplastic (LOC100274122), mRNA	NA	coding protein	psRNATarget
BT042257.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   ||||=*|||||=|||||||||||| targets:1496   UUUCUCCCUCAGUCCCCUUCAAUC   1519 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0181O20 mRNA, complete cds	NA	coding protein	psRNATarget
JB163452.1	ncRNA:24   AA--AGGUGGAGUUAGGGGAAGUUAG   1   ||--||=*|||||||||||||||||| targets:80   UUAAUCUCCCUCAAUCCCCUUCAAUC   105 Target Full Sequence	1.0	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
HI402991.1	ncRNA:24   AA--AGGUGGAGUUAGGGGAAGUUAG   1   ||--||=*|||||||||||||||||| targets:80   UUAAUCUCCCUCAAUCCCCUUCAAUC   105 Target Full Sequence	1.0	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235121.1	ncRNA:24   AA--AGGUGGAGUUAGGGGAAGUUAG   1   ||--||=*|||||||||||||||||| targets:80   UUAAUCUCCCUCAAUCCCCUUCAAUC   105 Target Full Sequence	1.0	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
EZ069159.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   |||||*|=*||||||||||||||| targets:56   UUUCCUCUCCAAUCCCCUUCAAUC   79 Target Full Sequence	3.0	TSA: Zea mays contig04794, mRNA sequence	NA	coding protein	psRNATarget
HI403033.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   |||*|||||||||||*|||||||* targets:59   UUUACACCUCAAUCCACUUCAAUA   82 Target Full Sequence	2.5	Sequence 1158 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235163.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   |||*|||||||||||*|||||||* targets:59   UUUACACCUCAAUCCACUUCAAUA   82 Target Full Sequence	2.5	Sequence 1158 from Patent EP2985353	NA	coding protein	psRNATarget
JB163494.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   |||*|||||||||||*|||||||* targets:59   UUUACACCUCAAUCCACUUCAAUA   82 Target Full Sequence	2.5	Sequence 1158 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241947.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   ***||||||||||||||*|||||| targets:72   AAACCACCUCAAUCCCCCUCAAUC   95 Target Full Sequence	1.5	Sequence 7942 from Patent EP2985353	NA	coding protein	psRNATarget
HI409817.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   ***||||||||||||||*|||||| targets:72   AAACCACCUCAAUCCCCCUCAAUC   95 Target Full Sequence	1.5	Sequence 7942 from Patent EP2074227	NA	coding protein	psRNATarget
JB170278.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   ***||||||||||||||*|||||| targets:72   AAACCACCUCAAUCCCCCUCAAUC   95 Target Full Sequence	1.5	Sequence 7942 from Patent EP2559767	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   **|||==*|||||||||||||||| targets:1413   AAUCCGUAUCAAUCCCCUUCAAUC   1436 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   **|||==*|||||||||||||||| targets:1457   AAUCCGUAUCAAUCCCCUUCAAUC   1480 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   **|||==*|||||||||||||||| targets:1475   AAUCCGUAUCAAUCCCCUUCAAUC   1498 Target Full Sequence	3.0	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   **|||==*|||||||||||||||| targets:1489   AAUCCGUAUCAAUCCCCUUCAAUC   1512 Target Full Sequence	3.0	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   **|||==*|||||||||||||||| targets:1489   AAUCCGUAUCAAUCCCCUUCAAUC   1512 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   **|||*||||||||||||*||||| targets:30   CAUCCCCCUCAAUCCCCUCCAAUC   53 Target Full Sequence	2.5	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
JB163954.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   **|||*||||||||||||*||||| targets:30   CAUCCCCCUCAAUCCCCUCCAAUC   53 Target Full Sequence	2.5	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
HI403493.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   **|||*||||||||||||*||||| targets:30   CAUCCCCCUCAAUCCCCUCCAAUC   53 Target Full Sequence	2.5	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020548088.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   **|*|||||||||||*|||||||| targets:5048   AAUACACCUCAAUCCACUUCAAUC   5071 Target Full Sequence	1.5	PREDICTED: Zea mays probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial (LOC103648345), mRNA	NA	coding protein	psRNATarget
LQ238258.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   **|*||=||||||||*|||||||| targets:73   AAUACAUCUCAAUCCACUUCAAUC   96 Target Full Sequence	2.5	Sequence 4253 from Patent EP2985353	NA	coding protein	psRNATarget
JB166589.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   **|*||=||||||||*|||||||| targets:73   AAUACAUCUCAAUCCACUUCAAUC   96 Target Full Sequence	2.5	Sequence 4253 from Patent EP2559767	NA	coding protein	psRNATarget
HI406128.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   **|*||=||||||||*|||||||| targets:73   AAUACAUCUCAAUCCACUUCAAUC   96 Target Full Sequence	2.5	Sequence 4253 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008665228.2	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   **|*|||=|||||||*|||||||| targets:730   AAUACACUUCAAUCCACUUCAAUC   753 Target Full Sequence	2.5	PREDICTED: Zea mays RNA-binding protein 3 (LOC103641920), mRNA	NA	coding protein	psRNATarget
EU950098.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   **|*||=||||||||*|||||||| targets:772   AAUACAUCUCAAUCCACUUCAAUC   795 Target Full Sequence	2.5	Zea mays clone 461257 mRNA sequence	NA	coding protein	psRNATarget
BT017823.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   ***=*=|||||||||=|||||||| targets:850   ACAUGGCCUCAAUCCUCUUCAAUC   873 Target Full Sequence	2.5	Zea mays clone EL01N0508B10.c mRNA sequence	NA	coding protein	psRNATarget
BT061407.1	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   **|*|||=|||||||*|||||||| targets:1078   AAUACACUUCAAUCCACUUCAAUC   1101 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0143D12 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008681984.2	ncRNA:24   AAAGGUGGAGUUAGGGGAAGUUAG   1   **|*||=||||||||*|||||||| targets:1331   AAUACAUCUCAAUCCACUUCAAUC   1354 Target Full Sequence	2.5	PREDICTED: Zea mays caleosin (LOC100285543), transcript variant X1, mRNA	NA	coding protein	psRNATarget