Search result

BaseInfo

ncRNA ID	novel_zma_miR3153
Species	Zea mays
Class	miRNA
Genome position	Chr2:156199902-156200005 [-]
Reference genome	RefGen_v4
Source	SRR2089715
Length	24
Mature sequence(if miRNA)	81 - AACUGGAGAUGAUUGGAUGAGCUA - 104
Stem-loop(if miRNA)	--        AU    G  U   -          A            CCUUCU   AACUGGAG  GAUU GA GAG CUAAAAUCUC UUCUUAUUCAAU      U   ||||||||  |||| || ||| |||||||||| ||||||||||||   UUGGCUUC  CUAA CU CUC GAUUUUAGAG AGGAAUAAGUUA      A UU        CC    A  -   A          G            AAAUUU
Stem-loop sequence	AACUGGAGAUGAUUGGAUGAGCUAAAAUCUCAUUCUUAUUCAAUCCUUCUUAUUUAAAAUUGAAUAAGGAGGAGAUUUUAGACUCUCAAAUCCCCUUCGGUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ063030.1	ncRNA:24   AUCGAGUAGGUUAGUAGAGGUCAA   1   *||=*||||||||||||||||*|* targets:237   AAGUGCAUCCAAUCAUCUCCAAUC   260 Target Full Sequence	2.5	TSA: Zea mays contig64152, mRNA sequence	NA	coding protein	psRNATarget
AY110339.1	ncRNA:24   AUCGAGUAGGUUAGUAGAGGUCAA   1   *||=*||||||||||||||||*|* targets:470   AAGUGCAUCCAAUCAUCUCCAAUC   493 Target Full Sequence	2.5	Zea mays CL6346_1 mRNA sequence	NA	coding protein	psRNATarget
BT017914.1	ncRNA:24   AUCGAGUAGGUUAGUAGAGGUCAA   1   *||=*||||||||||||||||*|* targets:484   AAGUGCAUCCAAUCAUCUCCAAUC   507 Target Full Sequence	2.5	Zea mays clone EL01N0518E07.c mRNA sequence	NA	coding protein	psRNATarget
BT064674.1	ncRNA:24   AUCGAGUAGGUUAGUAGAGGUCAA   1   *||=*||||||||||||||||*|* targets:1163   AAGUGCAUCCAAUCAUCUCCAAUC   1186 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0011B08 mRNA, complete cds	NA	coding protein	psRNATarget
BT024009.1	ncRNA:24   AUCGAGUAGGUUAGUAGAGGUCAA   1   *||=*||||||||||||||||*|* targets:1077   AAGUGCAUCCAAUCAUCUCCAAUC   1100 Target Full Sequence	2.5	Zea mays clone EL01N0402C05 mRNA sequence	NA	coding protein	psRNATarget
BT042744.1	ncRNA:24   AUCGAGUAGGUUAGUAGAGGUCAA   1   *||=*||||||||||||||||*|* targets:1287   AAGUGCAUCCAAUCAUCUCCAAUC   1310 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0034J19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154108.1	ncRNA:24   AUCGAGUAGGUUAGUAGAGGUCAA   1   *||=*||||||||||||||||*|* targets:1253   AAGUGCAUCCAAUCAUCUCCAAUC   1276 Target Full Sequence	2.5	Zea mays Actin-related protein 3 (cl6346_1), mRNA	NA	coding protein	psRNATarget
EU955860.1	ncRNA:24   AUCGAGUAGGUUAGUAGAGGUCAA   1   *||=*||||||||||||||||*|* targets:1253   AAGUGCAUCCAAUCAUCUCCAAUC   1276 Target Full Sequence	2.5	Zea mays clone 1549265 actin-like protein 3 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008645373.2	ncRNA:24   AUCGAGUAGGUUAGUAGAGGUCAA   1   *||=*||||||||||||||||*|* targets:1465   AAGUGCAUCCAAUCAUCUCCAAUC   1488 Target Full Sequence	2.5	PREDICTED: Zea mays Actin-related protein 3 (cl6346_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget