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BaseInfo

ncRNA ID	novel_zma_miR3144
Species	Zea mays
Class	miRNA
Genome position	Chr2:238612199-238612283 [-]
Reference genome	RefGen_v4
Source	SRR2089714;SRR2287163
Length	21
Mature sequence(if miRNA)	65 - CUUUCAUGCUAUCGUCAGUGG - 85
Stem-loop(if miRNA)	--C         A           AC      A    UACAU    UUUCAUGCU UCGUCAGUGGC  AAAAGG UAAG     G    ||||||||| |||||||||||  |||||| ||||     U    AAAGUACGG AGCAGUCACCG  UUUUCC AUUC     G GAA         G           CA      C    UUUUA
Stem-loop sequence	CUUUCAUGCUAUCGUCAGUGGCACAAAAGGAUAAGUACAUGUGAUUUUCUUACCCUUUUACGCCACUGACGAGGGCAUGAAAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU966028.1	ncRNA:21   GGUGACUGCUAUCGUACUUUC   1   *||||||*||*|||||||||| targets:980   GCACUGAGGAAAGCAUGAAAG   1000 Target Full Sequence	2.5	Zea mays clone 290934 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150661.1	ncRNA:21   GGUGACUGCUAUCGUACUUUC   1   *||||||*||*|||||||||| targets:980   GCACUGAGGAAAGCAUGAAAG   1000 Target Full Sequence	2.5	Zea mays uncharacterized LOC100276982 (LOC100276982), mRNA	NA	coding protein	psRNATarget
BT085281.1	ncRNA:21   GGUGACUGCUAUCGUACUUUC   1   *||||||*||*|||||||||| targets:951   GCACUGAGGAAAGCAUGAAAG   971 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0357O09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196143.1	ncRNA:21   GGUGACUGCUAUCGUACUUUC   1   *||||||*||*|||||||||| targets:951   GCACUGAGGAAAGCAUGAAAG   971 Target Full Sequence	2.5	Zea mays putative RING zinc finger domain superfamily protein (LOC100501425), mRNA	NA	coding protein	psRNATarget
XM_008660179.2	ncRNA:21   GGUGACUGCUAUCGUACUUUC   1   *||||||*||*|||||||||| targets:1017   GCACUGAGGAAAGCAUGAAAG   1037 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276982 (LOC100276982), transcript variant X1, mRNA	NA	coding protein	psRNATarget