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BaseInfo

ncRNA ID novel_zma_miR3142
Species Zea mays
Class miRNA
Genome position Chr7:152408989-152409082 [+]
Reference genome RefGen_v4
Source SRR1583944;SRR2647386;SRR1583942;SRR1583943
Length 24
Mature sequence(if miRNA) 71 - AUUUCCGACGGCUGGCCGUGGGCC - 94
Stem-loop(if miRNA) --    GU                   - U  UU       CGGGG    G
  CUCA  UGGCCAGCCGUCGGAAAUA G CU  UUUCCGA     GGCU G
  ||||  ||||||||||||||||||| | ||  |||||||     ||||
  GGGU  GCCGGUCGGCAGCCUUUAU C GA  AAAGGCU     CCGA G
CC    --                   U U  -U       ----A    G
Stem-loop sequence CUCAGUUGGCCAGCCGUCGGAAAUAGUCUUUUUUCCGACGGGGGGCUGGGGAGCCAUCGGAAAUAGUCUUAUUUCCGACGGCUGGCCGUGGGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020539916.1
ncRNA:24   CCGGGUGCCGGUCGGCAGCCUUUA   1
  ||||=|||||||||||||||||||
targets:40   GGCCUACGGCCAGCCGUCGGAAAU   63

0.0 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1-like (LOC109940397), mRNA NA coding protein psRNATarget
XM_020544174.1
ncRNA:24   CCGGGUGCCGGUCGGCAGCCUUUA   1
  ||||=|||||||||||||||||||
targets:52   GGCCUACGGCCAGCCGUCGGAAAU   75

0.0 PREDICTED: Zea mays uncharacterized LOC103639697 (LOC103639697), mRNA NA coding protein psRNATarget