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BaseInfo

ncRNA ID osa-miR818f
Species Oryza sativa
Class miRNA
Genome position Chr8:18746588-18746866 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 6 - GGGAGCAUGUAGGAUGGCCAU - 26
Stem-loop(if miRNA)     ---  G     CU  C    UU  GGUAAAGAAA       U         C     -   -        A                -       U   --GAAU     --UUUAUUUUAU     A    CUU    AU
GUGG   GG CAUCC  CA UGUU  CU          AAUAUAA GGAUUUUGA UUUUU CUU GCACUGUU GACCACUCGUCUUAUU AAAAAAA UUG      UAUUA            UUGUG CUUA   UAUU  C
||||   || |||||  || ||||  ||          ||||||| ||||||||| ||||| ||| |||||||| |||||||||||||||| ||||||| |||      |||||            ||||| ||||   ||||
UACC   CC GUAGG  GU ACGA  GA          UUAUAUU CCUAAAACU AAAAA GAA CGUGACAA UUGGUGAGCAGAAUAA UUUUUUU AAC      AUAAU            AACAC GAAU   AUGA  C
    GUA  G     AU  -    GG  -GGUAGGGCA       C         A     C   A        A                A       U   AGGUUU     UUUUUACUUUUC     -    UUC    AA
Stem-loop sequence GUGGGGGCAUCCCUCACUGUUUUCUGGUAAAGAAAAAUAUAAUGGAUUUUGACUUUUUCUUGCACUGUUAGACCACUCGUCUUAUUAAAAAAAUUUGGAAUUAUUAUUUAUUUUAUUUGUGACUUACUUUAUUAUCCAAAGUACUUUAAGCACAACUUUUCAUUUUUUAAUAUUUGGACAAUUUUUUUUAAAUAAGACGAGUGGUUAAACAGUGCAAAGCAAAAAAUCAAAAUCCCUUAUAUUACGGGAUGGAGGGAGCAUGUAGGAUGGCCAUGCCAU

Reference

1 PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage";
Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ;
Plant Cell. 23:4185-4207(2011).