ncRNA ID | osa-miR818f |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr8:18746588-18746866 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 6 - GGGAGCAUGUAGGAUGGCCAU - 26 |
Stem-loop(if miRNA) |
    ---  G     CU  C    UU  GGUAAAGAAA       U         C     -   -        A                -       U   --GAAU     --UUUAUUUUAU     A    CUU    AU GUGG   GG CAUCC  CA UGUU  CU          AAUAUAA GGAUUUUGA UUUUU CUU GCACUGUU GACCACUCGUCUUAUU AAAAAAA UUG      UAUUA            UUGUG CUUA   UAUU  C ||||   || |||||  || ||||  ||          ||||||| ||||||||| ||||| ||| |||||||| |||||||||||||||| ||||||| |||      |||||            ||||| ||||   |||| UACC   CC GUAGG  GU ACGA  GA          UUAUAUU CCUAAAACU AAAAA GAA CGUGACAA UUGGUGAGCAGAAUAA UUUUUUU AAC      AUAAU            AACAC GAAU   AUGA  C     GUA  G     AU  -    GG  -GGUAGGGCA       C         A     C   A        A                A       U   AGGUUU     UUUUUACUUUUC     -    UUC    AA |
Stem-loop sequence | GUGGGGGCAUCCCUCACUGUUUUCUGGUAAAGAAAAAUAUAAUGGAUUUUGACUUUUUCUUGCACUGUUAGACCACUCGUCUUAUUAAAAAAAUUUGGAAUUAUUAUUUAUUUUAUUUGUGACUUACUUUAUUAUCCAAAGUACUUUAAGCACAACUUUUCAUUUUUUAAUAUUUGGACAAUUUUUUUUAAAUAAGACGAGUGGUUAAACAGUGCAAAGCAAAAAAUCAAAAUCCCUUAUAUUACGGGAUGGAGGGAGCAUGUAGGAUGGCCAUGCCAU |
1 | PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011). |