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BaseInfo

ncRNA ID novel_zma_miR3136
Species Zea mays
Class miRNA
Genome position Chr2:15936791-15936883 [+]
Reference genome RefGen_v4
Source SRR2089714;SRR2287162
Length 24
Mature sequence(if miRNA) 1 - CCAUGUGGAUUGAGUGGGAUUAGA - 24
Stem-loop(if miRNA) --C           AG      UA  UGUAUUU      CA  C   U
   CAUGUGGAUUG  UGGGAU  GA       GAAUUC  AA AAG C
   |||||||||||  ||||||  ||       ||||||  || ||| A
   GUGUACCUAAC  ACCCUA  CU       UUUAAG  UU UUC A
UAU           CU      GC  ----UUU      AA  C   A
Stem-loop sequence CCAUGUGGAUUGAGUGGGAUUAGAUGUAUUUGAAUUCCAAACAAGUCAAACUUCUUAAGAAUUUUUUUCCGAUCCCAUCCAAUCCAUGUGUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008674375.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  |||||||=||||||||||||||||
targets:3440   UCUAAUCUCACUCAAUCCACAUGG   3463

1.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674375.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  |=||*|=||*||||||||||||||
targets:3514   UUUAUUUCCUCUCAAUCCACAUGG   3537

2.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674376.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  |||||||=||||||||||||||||
targets:3409   UCUAAUCUCACUCAAUCCACAUGG   3432

1.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674376.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  |=||*|=||*||||||||||||||
targets:3483   UUUAUUUCCUCUCAAUCCACAUGG   3506

2.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674377.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  |||||||=||||||||||||||||
targets:3396   UCUAAUCUCACUCAAUCCACAUGG   3419

1.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008674377.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  |=||*|=||*||||||||||||||
targets:3470   UUUAUUUCCUCUCAAUCCACAUGG   3493

2.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008669549.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  |||||||||||||||||||=||||
targets:2084   UCUAAUCCCACUCAAUCCAUAUGG   2107

1.5 PREDICTED: Zea mays hypothetical protein (LOC100279312), transcript variant X1, mRNA NA coding protein psRNATarget
BT042044.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  |||||||||||||||||||=||||
targets:1367   UCUAAUCCCACUCAAUCCAUAUGG   1390

1.5 Zea mays full-length cDNA clone ZM_BFb0117M08 mRNA, complete cds NA coding protein psRNATarget
AY112141.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  |||||||=|||||||||=||||||
targets:230   UCUAAUCUCACUCAAUCUACAUGG   253

2.5 Zea mays CL24213_1 mRNA sequence NA coding protein psRNATarget
XM_020545430.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:5806   UCCAAUCCCACUCAAUCCACAUGG   5829

0.0 PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA NA coding protein psRNATarget
XM_008658241.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:1231   UCCAAUCCCACUCAAUCCACAUGG   1254

0.0 PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549842.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:1201   UCCAAUCCCACUCAAUCCACAUGG   1224

0.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020549841.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:1201   UCCAAUCCCACUCAAUCCACAUGG   1224

0.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549843.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:1083   UCCAAUCCCACUCAAUCCACAUGG   1106

0.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA NA coding protein psRNATarget
BT066874.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:1960   UCCAAUCCCACUCAAUCCACAUGG   1983

0.0 Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds NA coding protein psRNATarget
NM_001175969.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:1960   UCCAAUCCCACUCAAUCCACAUGG   1983

0.0 Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA NA coding protein psRNATarget
XM_008679547.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:2502   UCCAAUCCCACUCAAUCCACAUGG   2525

0.0 PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008661718.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:2213   UCCAAUCCCACUCAAUCCACAUGG   2236

0.0 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA NA coding protein psRNATarget
EU955633.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:1817   UCCAAUCCCACUCAAUCCACAUGG   1840

0.0 Zea mays clone 1540038 transposon protein mRNA, complete cds NA coding protein psRNATarget
NM_001154031.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:1817   UCCAAUCCCACUCAAUCCACAUGG   1840

0.0 Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA NA coding protein psRNATarget
BT088232.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:1532   UCCAAUCCCACUCAAUCCACAUGG   1555

0.0 Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds NA coding protein psRNATarget
NM_001279968.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:1532   UCCAAUCCCACUCAAUCCACAUGG   1555

0.0 Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA NA coding protein psRNATarget
BT066441.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  |||||||||||*||||||||||||
targets:1529   UCUAAUCCCACCCAAUCCACAUGG   1552

1.5 Zea mays full-length cDNA clone ZM_BFc0165B04 mRNA, complete cds NA coding protein psRNATarget
BT069115.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:530   UCCAAUCCCACUCAAUCCACAUGG   553

0.0 Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds NA coding protein psRNATarget
BT085319.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:178   UCCAAUCCCACUCAAUCCACAUGG   201

0.0 Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds NA coding protein psRNATarget
XM_020552889.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:876   UCCAAUCCCACUCAAUCCACAUGG   899

0.0 PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA NA coding protein psRNATarget
EU951448.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:747   UCCAAUCCCACUCAAUCCACAUGG   770

0.0 Zea mays clone 701961 mRNA sequence NA coding protein psRNATarget
LQ235220.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:100   UCCAAUCCCACUCAAUCCACAUGG   123

0.0 Sequence 1215 from Patent EP2985353 NA coding protein psRNATarget
LQ235224.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:100   UCCAAUCCCACUCAAUCCACAUGG   123

0.0 Sequence 1219 from Patent EP2985353 NA coding protein psRNATarget
JB163555.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:100   UCCAAUCCCACUCAAUCCACAUGG   123

0.0 Sequence 1219 from Patent EP2559767 NA coding protein psRNATarget
HI403094.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:100   UCCAAUCCCACUCAAUCCACAUGG   123

0.0 Sequence 1219 from Patent EP2074227 NA coding protein psRNATarget
JB163551.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:100   UCCAAUCCCACUCAAUCCACAUGG   123

0.0 Sequence 1215 from Patent EP2559767 NA coding protein psRNATarget
HI403090.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:100   UCCAAUCCCACUCAAUCCACAUGG   123

0.0 Sequence 1215 from Patent EP2074227 NA coding protein psRNATarget
HI405841.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:91   UCCAAUCCCACUCAAUCCACAUGG   114

0.0 Sequence 3966 from Patent EP2074227 NA coding protein psRNATarget
LQ237971.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:91   UCCAAUCCCACUCAAUCCACAUGG   114

0.0 Sequence 3966 from Patent EP2985353 NA coding protein psRNATarget
JB166302.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:91   UCCAAUCCCACUCAAUCCACAUGG   114

0.0 Sequence 3966 from Patent EP2559767 NA coding protein psRNATarget
HI405902.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:82   UCCAAUCCCACUCAAUCCACAUGG   105

0.0 Sequence 4027 from Patent EP2074227 NA coding protein psRNATarget
LQ238032.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:82   UCCAAUCCCACUCAAUCCACAUGG   105

0.0 Sequence 4027 from Patent EP2985353 NA coding protein psRNATarget
JB166363.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:82   UCCAAUCCCACUCAAUCCACAUGG   105

0.0 Sequence 4027 from Patent EP2559767 NA coding protein psRNATarget
JB166350.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:81   UCCAAUCCCACUCAAUCCACAUGG   104

0.0 Sequence 4014 from Patent EP2559767 NA coding protein psRNATarget
LQ238019.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:81   UCCAAUCCCACUCAAUCCACAUGG   104

0.0 Sequence 4014 from Patent EP2985353 NA coding protein psRNATarget
HI405889.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||||||||||||||
targets:81   UCCAAUCCCACUCAAUCCACAUGG   104

0.0 Sequence 4014 from Patent EP2074227 NA coding protein psRNATarget
EU960921.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  |=||||||=||||||||||||||*
targets:1252   UUUAAUCCUACUCAAUCCACAUGC   1275

2.0 Zea mays clone 229589 histone deacetylase 11 mRNA, complete cds NA coding protein psRNATarget
NM_001279564.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  |=||||||=||||||||||||||*
targets:1249   UUUAAUCCUACUCAAUCCACAUGC   1272

2.0 Zea mays uncharacterized LOC100277470 (LOC100277470), mRNA NA coding protein psRNATarget
EU968756.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  |=||||||=||||||||||||||*
targets:928   UUUAAUCCUACUCAAUCCACAUGC   951

2.0 Zea mays clone 323940 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020542399.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||=|||||||||||
targets:7262   UCCAAUCCCACUUAAUCCACAUGG   7285

1.5 PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008657578.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||=|||||||||||
targets:7251   UCCAAUCCCACUUAAUCCACAUGG   7274

1.5 PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008657579.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||=|||||||||||
targets:7147   UCCAAUCCCACUUAAUCCACAUGG   7170

1.5 PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020539703.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||||=||||||||||||||
targets:62   UCCAAUCCCGCUCAAUCCACAUGG   85

1.0 PREDICTED: Zea mays uncharacterized LOC109940256 (LOC109940256), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008675817.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||-|||||||||||||||||||||
targets:4060   UC-AAUCCCACUCAAUCCACAUGG   4082

0.0 PREDICTED: Zea mays probable chromatin-remodeling complex ATPase chain (LOC103650180), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541448.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||||=||||||||||||||
targets:2906   UCCAAUCCCGCUCAAUCCACAUGG   2929

1.0 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541449.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||||=||||||||||||||
targets:2802   UCCAAUCCCGCUCAAUCCACAUGG   2825

1.0 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020549703.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||=||||||||||||||||
targets:2350   UCCAAUCUCACUCAAUCCACAUGG   2373

1.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549704.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||=||||||||||||||||
targets:2290   UCCAAUCUCACUCAAUCCACAUGG   2313

1.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674604.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||=||||||||||||||||
targets:2283   UCCAAUCUCACUCAAUCCACAUGG   2306

1.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA NA coding protein psRNATarget
EU956718.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||=||||||||||||||||
targets:2155   UCCAAUCUCACUCAAUCCACAUGG   2178

1.0 Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds NA coding protein psRNATarget
NM_001154362.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||=||||||||||||||||
targets:2154   UCCAAUCUCACUCAAUCCACAUGG   2177

1.0 Zea mays protein kinase domain containing protein (LOC100281444), mRNA NA coding protein psRNATarget
XM_008664275.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||||=||||||||||||||
targets:2142   UCCAAUCCCGCUCAAUCCACAUGG   2165

1.0 PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X1, mRNA NA coding protein psRNATarget
BT063416.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||=||||||||||||||||
targets:2082   UCCAAUCUCACUCAAUCCACAUGG   2105

1.0 Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds NA coding protein psRNATarget
BT018903.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||||=||||||||||||||
targets:2031   UCCAAUCCCGCUCAAUCCACAUGG   2054

1.0 Zea mays clone EL01T0208C03.d mRNA sequence NA coding protein psRNATarget
XM_008664276.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||||=||||||||||||||
targets:2049   UCCAAUCCCGCUCAAUCCACAUGG   2072

1.0 PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008645867.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||||=||||||||||||||
targets:1954   UCCAAUCCCGCUCAAUCCACAUGG   1977

1.0 PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020553538.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||||=||||||||||||||
targets:1888   UCCAAUCCCGCUCAAUCCACAUGG   1911

1.0 PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008645912.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||||=||||||||||||||
targets:1621   UCCAAUCCCGCUCAAUCCACAUGG   1644

1.0 PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA NA coding protein psRNATarget
BT066987.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||-|||||||||||||||||||||
targets:1418   UC-AAUCCCACUCAAUCCACAUGG   1440

0.0 Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds NA coding protein psRNATarget
NM_001176594.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||||=||||||||||||||
targets:1130   UCCAAUCCCGCUCAAUCCACAUGG   1153

1.0 Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA NA coding protein psRNATarget
BT068797.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||||=||||||||||||||
targets:1130   UCCAAUCCCGCUCAAUCCACAUGG   1153

1.0 Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds NA coding protein psRNATarget
BT041052.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||-|||||||||||||||||||||
targets:1127   UC-AAUCCCACUCAAUCCACAUGG   1149

0.0 Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds NA coding protein psRNATarget
NM_001147844.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||-|||||||||||||||||||||
targets:1127   UC-AAUCCCACUCAAUCCACAUGG   1149

0.0 Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA NA coding protein psRNATarget
BT062183.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||=||||||||||||||||
targets:248   UCCAAUCUCACUCAAUCCACAUGG   271

1.0 Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds NA coding protein psRNATarget
BT086633.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||=||||||||||||||||
targets:457   UCCAAUCUCACUCAAUCCACAUGG   480

1.0 Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds NA coding protein psRNATarget
EU942673.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||-|||||||||||||||||||||
targets:94   UC-AAUCCCACUCAAUCCACAUGG   116

0.0 Zea mays clone 1529344 mRNA sequence NA coding protein psRNATarget
HI403019.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||=|||||||||||
targets:100   UCCAAUCCCACUUAAUCCACAUGG   123

1.5 Sequence 1144 from Patent EP2074227 NA coding protein psRNATarget
LQ235149.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||=|||||||||||
targets:100   UCCAAUCCCACUUAAUCCACAUGG   123

1.5 Sequence 1144 from Patent EP2985353 NA coding protein psRNATarget
JB163480.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||||=|||||||||||
targets:100   UCCAAUCCCACUUAAUCCACAUGG   123

1.5 Sequence 1144 from Patent EP2559767 NA coding protein psRNATarget
LQ235150.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||-|||||||||||||||||||||
targets:101   UC-AAUCCCACUCAAUCCACAUGG   123

0.0 Sequence 1145 from Patent EP2985353 NA coding protein psRNATarget
JB163481.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||-|||||||||||||||||||||
targets:101   UC-AAUCCCACUCAAUCCACAUGG   123

0.0 Sequence 1145 from Patent EP2559767 NA coding protein psRNATarget
HI403020.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||-|||||||||||||||||||||
targets:101   UC-AAUCCCACUCAAUCCACAUGG   123

0.0 Sequence 1145 from Patent EP2074227 NA coding protein psRNATarget
HI405878.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||=||||||||||||||||
targets:93   UCCAAUCUCACUCAAUCCACAUGG   116

1.0 Sequence 4003 from Patent EP2074227 NA coding protein psRNATarget
JB166339.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||=||||||||||||||||
targets:93   UCCAAUCUCACUCAAUCCACAUGG   116

1.0 Sequence 4003 from Patent EP2559767 NA coding protein psRNATarget
LQ238008.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||=||||||||||||||||
targets:93   UCCAAUCUCACUCAAUCCACAUGG   116

1.0 Sequence 4003 from Patent EP2985353 NA coding protein psRNATarget
JB166338.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||=||||||||||||||||
targets:89   UCCAAUCUCACUCAAUCCACAUGG   112

1.0 Sequence 4002 from Patent EP2559767 NA coding protein psRNATarget
HI405877.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||=||||||||||||||||
targets:89   UCCAAUCUCACUCAAUCCACAUGG   112

1.0 Sequence 4002 from Patent EP2074227 NA coding protein psRNATarget
LQ238007.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||=||||||||||||||||
targets:89   UCCAAUCUCACUCAAUCCACAUGG   112

1.0 Sequence 4002 from Patent EP2985353 NA coding protein psRNATarget
HI405893.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||=||||||||||||||||
targets:81   UCCAAUCUCACUCAAUCCACAUGG   104

1.0 Sequence 4018 from Patent EP2074227 NA coding protein psRNATarget
JB166354.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||=||||||||||||||||
targets:81   UCCAAUCUCACUCAAUCCACAUGG   104

1.0 Sequence 4018 from Patent EP2559767 NA coding protein psRNATarget
LQ238023.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||=||||||||||||||||
targets:81   UCCAAUCUCACUCAAUCCACAUGG   104

1.0 Sequence 4018 from Patent EP2985353 NA coding protein psRNATarget
EZ092645.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||=||||||||||||||||
targets:18   UCCAAUCUCACUCAAUCCACAUGG   41

1.0 TSA: Zea mays contig28294, mRNA sequence NA coding protein psRNATarget
EZ064016.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||||||||||||||||||*
targets:122   UCCAAUCCCACUCAAUCCACAUGA   145

1.0 TSA: Zea mays contig65139, mRNA sequence NA coding protein psRNATarget
BT061560.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||-||||=||||||||||||||||
targets:1446   UC-AAUCUCACUCAAUCCACAUGG   1468

1.0 Zea mays full-length cDNA clone ZM_BFb0158C09 mRNA, complete cds NA coding protein psRNATarget
NM_001174368.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||-||||=||||||||||||||||
targets:1446   UC-AAUCUCACUCAAUCCACAUGG   1468

1.0 Zea mays hypothetical protein (LOC100381539), mRNA NA coding protein psRNATarget
AY103719.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||==||||||||||||||
targets:880   UCCAAUCCUGCUCAAUCCACAUGG   903

2.0 Zea mays PCO137008 mRNA sequence NA coding protein psRNATarget
JB166364.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||==||||||||||||||
targets:81   UCCAAUCCUGCUCAAUCCACAUGG   104

2.0 Sequence 4028 from Patent EP2559767 NA coding protein psRNATarget
HI405903.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||==||||||||||||||
targets:81   UCCAAUCCUGCUCAAUCCACAUGG   104

2.0 Sequence 4028 from Patent EP2074227 NA coding protein psRNATarget
LQ238033.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||==||||||||||||||
targets:81   UCCAAUCCUGCUCAAUCCACAUGG   104

2.0 Sequence 4028 from Patent EP2985353 NA coding protein psRNATarget
EU952677.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  *=||||*|||||||||||||||||
targets:987   CUUAAUACCACUCAAUCCACAUGG   1010

1.0 Zea mays clone 1286167 mitochondrial glycoprotein mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
BT042439.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  *=||||*|||||||||||||||||
targets:965   CUUAAUACCACUCAAUCCACAUGG   988

1.0 Zea mays full-length cDNA clone ZM_BFb0234C02 mRNA, complete cds NA coding protein psRNATarget
BT066125.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  *=||||*|||||||||||||||||
targets:1074   CUUAAUACCACUCAAUCCACAUGG   1097

1.0 Zea mays full-length cDNA clone ZM_BFb0377H04 mRNA, complete cds NA coding protein psRNATarget
XM_008678388.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||||||*||||||||||||
targets:1829   UCCAAUCCCACCCAAUCCACAUGG   1852

1.5 PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008678390.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||||||*||||||||||||
targets:1813   UCCAAUCCCACCCAAUCCACAUGG   1836

1.5 PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008659614.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||||||*||||||||||||
targets:187   UCCAAUCCCACACAAUCCACAUGG   210

1.5 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase A (LOC103637414), mRNA NA coding protein psRNATarget
HI409272.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||||||*||||||||||||
targets:76   UCCAAUCCCACCCAAUCCACAUGG   99

1.5 Sequence 7397 from Patent EP2074227 NA coding protein psRNATarget
LQ241402.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||||||*||||||||||||
targets:76   UCCAAUCCCACCCAAUCCACAUGG   99

1.5 Sequence 7397 from Patent EP2985353 NA coding protein psRNATarget
JB169733.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||||||*||||||||||||
targets:76   UCCAAUCCCACCCAAUCCACAUGG   99

1.5 Sequence 7397 from Patent EP2559767 NA coding protein psRNATarget
XM_020546136.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  *|*|||=||||||||||=||||||
targets:3281   CCCAAUUCCACUCAAUCUACAUGG   3304

2.5 PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103642139), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546135.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  *|*|||=||||||||||=||||||
targets:3134   CCCAAUUCCACUCAAUCUACAUGG   3157

2.5 PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103642139), transcript variant X1, mRNA NA coding protein psRNATarget
EU948930.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  *|*|||=||||||||||=||||||
targets:422   CCCAAUUCCACUCAAUCUACAUGG   445

2.5 Zea mays clone 390579 mRNA sequence NA coding protein psRNATarget
LQ235173.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||=||=||||||||||||*
targets:100   UCCAAUCUCAUUCAAUCCACAUGA   123

3.0 Sequence 1168 from Patent EP2985353 NA coding protein psRNATarget
HI403043.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||=||=||||||||||||*
targets:100   UCCAAUCUCAUUCAAUCCACAUGA   123

3.0 Sequence 1168 from Patent EP2074227 NA coding protein psRNATarget
JB163504.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||=||=||||||||||||*
targets:100   UCCAAUCUCAUUCAAUCCACAUGA   123

3.0 Sequence 1168 from Patent EP2559767 NA coding protein psRNATarget
XM_020539455.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||=*||||||||||||
targets:279   UCCAAUCCCAUCCAAUCCACAUGG   302

2.5 PREDICTED: Zea mays Putative ARM repeat-containing protein containing family protein (LOC103629927), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020551501.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||=*||||||||||||
targets:1290   UCCAAUCCCAUCCAAUCCACAUGG   1313

2.5 PREDICTED: Zea mays RNA-binding (RRM/RBD/RNP motifs) family protein (cl12347_2a), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008666492.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||=|||||||||||||*|
targets:3755   UCCAAUCCUACUCAAUCCACAUAG   3778

2.5 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008666491.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||=|||||||||||||*|
targets:3750   UCCAAUCCUACUCAAUCCACAUAG   3773

2.5 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546709.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||=|||||||||||||*|
targets:3468   UCCAAUCCUACUCAAUCCACAUAG   3491

2.5 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008666493.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||=|||||||||||||*|
targets:3482   UCCAAUCCUACUCAAUCCACAUAG   3505

2.5 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X3, mRNA NA coding protein psRNATarget
EU949831.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||=|||||||||||||*|
targets:1015   UCCAAUCCUACUCAAUCCACAUAG   1038

2.5 Zea mays clone 447574 mRNA sequence NA coding protein psRNATarget
BT035134.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||=|||*||||||||||||
targets:1218   UCCAAUCUCACCCAAUCCACAUGG   1241

2.5 Zea mays full-length cDNA clone ZM_BFb0041I21 mRNA, complete cds NA coding protein psRNATarget
NM_001138165.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||=|||*||||||||||||
targets:1218   UCCAAUCUCACCCAAUCCACAUGG   1241

2.5 Zea mays B3 domain-containing protein (LOC100192994), mRNA NA coding protein psRNATarget
XM_008647186.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||=|||*||||||||||||
targets:1056   UCCAAUCUCACCCAAUCCACAUGG   1079

2.5 PREDICTED: Zea mays B3 domain-containing protein (LOC100192994), transcript variant X1, mRNA NA coding protein psRNATarget
BT087300.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*||||=|||*||||||||||||
targets:1023   UCCAAUCUCACCCAAUCCACAUGG   1046

2.5 Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds NA coding protein psRNATarget
EU942657.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||=|||||||||||||*|
targets:237   UCCAAUCCUACUCAAUCCACAUAG   260

2.5 Zea mays clone 1527578 mRNA sequence NA coding protein psRNATarget
LQ242244.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||=*||||||||||||
targets:76   UCCAAUCCCAUCCAAUCCACAUGG   99

2.5 Sequence 8239 from Patent EP2985353 NA coding protein psRNATarget
HI410114.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||=*||||||||||||
targets:76   UCCAAUCCCAUCCAAUCCACAUGG   99

2.5 Sequence 8239 from Patent EP2074227 NA coding protein psRNATarget
JB170575.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||*|||||||=*||||||||||||
targets:76   UCCAAUCCCAUCCAAUCCACAUGG   99

2.5 Sequence 8239 from Patent EP2559767 NA coding protein psRNATarget
BT068463.1
ncRNA:24   AGA-UUAGGGUGAGUUAGGUGUACC   1
  |=|-||||||*|||||||||=||||
targets:1207   UUUGAAUCCCCCUCAAUCCAUAUGG   1231

2.5 Zea mays full-length cDNA clone ZM_BFb0213N24 mRNA, complete cds NA coding protein psRNATarget
NM_001151506.1
ncRNA:24   AGA-UUAGGGUGAGUUAGGUGUACC   1
  |=|-||||||*|||||||||=||||
targets:935   UUUGAAUCCCCCUCAAUCCAUAUGG   959

2.5 Zea mays ER membrane protein complex subunit 7-like protein (pco145885(696)), mRNA NA coding protein psRNATarget
EU972032.1
ncRNA:24   AGA-UUAGGGUGAGUUAGGUGUACC   1
  |=|-||||||*|||||||||=||||
targets:935   UUUGAAUCCCCCUCAAUCCAUAUGG   959

2.5 Zea mays clone 373636 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT068594.1
ncRNA:24   AGA-UUAGGGUGAGUUAGGUGUACC   1
  |=|-||||||*|||||||||=||||
targets:905   UUUGAAUCCCCCUCAAUCCAUAUGG   929

2.5 Zea mays full-length cDNA clone ZM_BFb0348O14 mRNA, complete cds NA coding protein psRNATarget
AY104043.1
ncRNA:24   AGA-UUAGGGUGAGUUAGGUGUACC   1
  |=|-||||||*|||||||||=||||
targets:908   UUUGAAUCCCCCUCAAUCCAUAUGG   932

2.5 Zea mays PCO145885 mRNA sequence NA coding protein psRNATarget
EU951312.1
ncRNA:24   AGA-UUAGGGUGAGUUAGGUGUACC   1
  |=|-||||||*|||||||||=||||
targets:368   UUUGAAUCCCCCUCAAUCCAUAUGG   392

2.5 Zea mays clone 695515 mRNA sequence NA coding protein psRNATarget
XM_008680349.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||-||||||*|||||||||=||||
targets:1969   UC-AAUCCCCCUCAAUCCAUAUGG   1991

2.5 PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA NA coding protein psRNATarget
EU955707.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||-||||||*|||||||||=||||
targets:606   UC-AAUCCCCCUCAAUCCAUAUGG   628

2.5 Zea mays clone 1543022 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU962730.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||-||||||*|||||||||=||||
targets:1073   UC-AAUCCCUCUCAAUCCAUAUGG   1095

2.5 Zea mays clone 245054 mRNA sequence NA coding protein psRNATarget
BT061531.2
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||-||||||*|||||||||=||||
targets:849   UC-AAUCCCCCUCAAUCCAUAUGG   871

2.5 Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds NA coding protein psRNATarget
BT054344.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||-|||*|||=|||||||||||||
targets:1132   UC-AAUACCAUUCAAUCCACAUGG   1154

2.0 Zea mays full-length cDNA clone ZM_BFb0357J03 mRNA, complete cds NA coding protein psRNATarget
NM_001152495.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||-|||*|||=|||||||||||||
targets:1132   UC-AAUACCAUUCAAUCCACAUGG   1154

2.0 Zea mays OTU-like cysteine protease family protein (LOC100279494), mRNA NA coding protein psRNATarget
JB170278.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||-||||||*|||||||||=||||
targets:80   UC-AAUCCCCCUCAAUCCAUAUGG   102

2.5 Sequence 7942 from Patent EP2559767 NA coding protein psRNATarget
LQ241947.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||-||||||*|||||||||=||||
targets:80   UC-AAUCCCCCUCAAUCCAUAUGG   102

2.5 Sequence 7942 from Patent EP2985353 NA coding protein psRNATarget
HI409817.1
ncRNA:24   AGAUUAGGGUGAGUUAGGUGUACC   1
  ||-||||||*|||||||||=||||
targets:80   UC-AAUCCCCCUCAAUCCAUAUGG   102

2.5 Sequence 7942 from Patent EP2074227 NA coding protein psRNATarget
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