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BaseInfo

ncRNA ID novel_zma_miR3132
Species Zea mays
Class miRNA
Genome position Chr2:170016525-170016594 [+]
Reference genome RefGen_v4
Source SRR2089714;SRR2089715;SRR2287159;SRR2287161;SRR2287162;SRR5451005;SRR2089698;SRR2089703;SRR2089705;SRR2089706;SRR2089707
Length 21
Mature sequence(if miRNA) 50 - ACUUAGGAACGGAGGGAGUAC - 70
Stem-loop(if miRNA) --      UUG   C    U    A   U  AG  G
  GCUCCU   CCG UCCU GGUC CUG GC  AU A
  ||||||   ||| |||| |||| ||| ||  || C
  UGAGGG   GGC AGGA UCAG GGU CG  UA U
CA      --A   A    U    A   -  CA  A
Stem-loop sequence GCUCCUUUGCCGCUCCUUGGUCACUGUGCAGAUGACUAAUACGCUGGAGACUUAGGAACGGAGGGAGUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020539258.1
ncRNA:21   CAUGAGGGAGGCAAGGAUUCA   1
  |*||||||||||||||*||||
targets:1890   GGACUCCCUCCGUUCCCAAGU   1910

1.5 PREDICTED: Zea mays aspartyl protease family protein 1-like (LOC109940156), mRNA NA coding protein psRNATarget
DQ246106.1
ncRNA:21   CAUGAGGGAGGCAAGGAUUCA   1
  *|||||||||||||||*|||*
targets:741   AUACUCCCUCCGUUCCAAAGG   761

2.5 Zea mays clone 18246 mRNA sequence NA coding protein psRNATarget