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BaseInfo

ncRNA ID novel_zma_miR3131
Species Zea mays
Class miRNA
Genome position Chr2:169023815-169023875 [+]
Reference genome RefGen_v4
Source SRR2089714
Length 24
Mature sequence(if miRNA) 1 - AUAAAUUGUAAAAUACGGAAACUA - 24
Stem-loop(if miRNA) --A        AAA               C
   UAAAUUGU   AUACGGAAACUAAAA U
   ||||||||   ||||||||||||||| C
   AUUUAACG   UAUGUCUUUGAUUUU U
GGG        GUA               A
Stem-loop sequence AUAAAUUGUAAAAUACGGAAACUAAAACUCUAUUUUAGUUUCUGUAUAUGGCAAUUUAGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020549268.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*||||||=||||||||
targets:1206   UAGUUUCCAUAUUUUGCAAUUUAU   1229

2.5 PREDICTED: Zea mays ethylene-responsive transcription factor ERF039 (LOC100283619), mRNA NA coding protein psRNATarget
EU945607.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*||||||=||||||||
targets:207   UAGUUUCCAUAUUUUGCAAUUUAU   230

2.5 Zea mays clone 279279 mRNA sequence NA coding protein psRNATarget
JB167075.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*||||||=||||||||
targets:39   UAGUUUCCAUAUUUUGCAAUUUAU   62

2.5 Sequence 4739 from Patent EP2559767 NA coding protein psRNATarget
HI406614.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*||||||=||||||||
targets:39   UAGUUUCCAUAUUUUGCAAUUUAU   62

2.5 Sequence 4739 from Patent EP2074227 NA coding protein psRNATarget
LQ238744.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*||||||=||||||||
targets:39   UAGUUUCCAUAUUUUGCAAUUUAU   62

2.5 Sequence 4739 from Patent EP2985353 NA coding protein psRNATarget
BT019141.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*|||||*|||||||||
targets:358   UAGUUUCCUUAUUUAACAAUUUAU   381

2.5 Zea mays clone Contig786.F mRNA sequence NA coding protein psRNATarget
BT085047.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*|||||*|||||||||
targets:1284   UAGUUUCCCUAUUUAACAAUUUAU   1307

2.5 Zea mays full-length cDNA clone ZM_BFb0232J05 mRNA, complete cds NA coding protein psRNATarget
HI406713.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*|||||*|||||||||
targets:233   UAGUUUCCUUAUUUAACAAUUUAU   256

2.5 Sequence 4838 from Patent EP2074227 NA coding protein psRNATarget
JB167174.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*|||||*|||||||||
targets:233   UAGUUUCCUUAUUUAACAAUUUAU   256

2.5 Sequence 4838 from Patent EP2559767 NA coding protein psRNATarget
LQ238843.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*|||||*|||||||||
targets:233   UAGUUUCCUUAUUUAACAAUUUAU   256

2.5 Sequence 4838 from Patent EP2985353 NA coding protein psRNATarget
LQ235490.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*|||||*|||||||||
targets:59   UAGUUUCCAUAUUUAACAAUUUAU   82

2.5 Sequence 1485 from Patent EP2985353 NA coding protein psRNATarget
HI403360.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*|||||*|||||||||
targets:59   UAGUUUCCAUAUUUAACAAUUUAU   82

2.5 Sequence 1485 from Patent EP2074227 NA coding protein psRNATarget
LQ235521.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*|||||*|||||||||
targets:59   UAGUUUCCCUAUUUAACAAUUUAU   82

2.5 Sequence 1516 from Patent EP2985353 NA coding protein psRNATarget
JB163892.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*|||||*|||||||||
targets:59   UAGUUUCCCUAUUUAACAAUUUAU   82

2.5 Sequence 1556 from Patent EP2559767 NA coding protein psRNATarget
JB163909.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*|||||*|||||||||
targets:59   UAGUUUCCCUAUUUAACAAUUUAU   82

2.5 Sequence 1573 from Patent EP2559767 NA coding protein psRNATarget
HI403391.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*|||||*|||||||||
targets:59   UAGUUUCCCUAUUUAACAAUUUAU   82

2.5 Sequence 1516 from Patent EP2074227 NA coding protein psRNATarget
LQ235578.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*|||||*|||||||||
targets:59   UAGUUUCCCUAUUUAACAAUUUAU   82

2.5 Sequence 1573 from Patent EP2985353 NA coding protein psRNATarget
JB163821.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*|||||*|||||||||
targets:59   UAGUUUCCAUAUUUAACAAUUUAU   82

2.5 Sequence 1485 from Patent EP2559767 NA coding protein psRNATarget
JB163852.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*|||||*|||||||||
targets:59   UAGUUUCCCUAUUUAACAAUUUAU   82

2.5 Sequence 1516 from Patent EP2559767 NA coding protein psRNATarget
LQ235561.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*|||||*|||||||||
targets:59   UAGUUUCCCUAUUUAACAAUUUAU   82

2.5 Sequence 1556 from Patent EP2985353 NA coding protein psRNATarget
HI403431.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*|||||*|||||||||
targets:59   UAGUUUCCCUAUUUAACAAUUUAU   82

2.5 Sequence 1556 from Patent EP2074227 NA coding protein psRNATarget
HI403448.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*|||||*|||||||||
targets:59   UAGUUUCCCUAUUUAACAAUUUAU   82

2.5 Sequence 1573 from Patent EP2074227 NA coding protein psRNATarget
JB163726.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*|||||*|||||||||
targets:59   UAGUUUCCCUAUUUAACAAUUUAU   82

2.5 Sequence 1390 from Patent EP2559767 NA coding protein psRNATarget
LQ235395.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*|||||*|||||||||
targets:59   UAGUUUCCCUAUUUAACAAUUUAU   82

2.5 Sequence 1390 from Patent EP2985353 NA coding protein psRNATarget
HI403265.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*|||||*|||||||||
targets:59   UAGUUUCCCUAUUUAACAAUUUAU   82

2.5 Sequence 1390 from Patent EP2074227 NA coding protein psRNATarget
HI406819.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*|||||*|||||||||
targets:41   UAGUUUCCCUAUUUAACAAUUUAU   64

2.5 Sequence 4944 from Patent EP2074227 NA coding protein psRNATarget
JB167280.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*|||||*|||||||||
targets:41   UAGUUUCCCUAUUUAACAAUUUAU   64

2.5 Sequence 4944 from Patent EP2559767 NA coding protein psRNATarget
LQ238949.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||||||||*|||||*|||||||||
targets:41   UAGUUUCCCUAUUUAACAAUUUAU   64

2.5 Sequence 4944 from Patent EP2985353 NA coding protein psRNATarget
XM_020552869.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||*|||||*||||||=||||||||
targets:1723   UAAUUUCCAUAUUUUGCAAUUUAU   1746

2.5 PREDICTED: Zea mays NADPH:adrenodoxin oxidoreductase, mitochondrial-like (LOC109946102), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550132.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||*|||||*||||||=||||||||
targets:84   UAAUUUCCAUAUUUUGCAAUUUAU   107

2.5 PREDICTED: Zea mays putrescine hydroxycinnamoyltransferase 1-like (LOC103649816), transcript variant X1, mRNA NA coding protein psRNATarget
LQ235493.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||*|||||*|||||*|||||||||
targets:59   UAAUUUCCCUAUUUAACAAUUUAU   82

2.5 Sequence 1488 from Patent EP2985353 NA coding protein psRNATarget
JB163824.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||*|||||*|||||*|||||||||
targets:59   UAAUUUCCCUAUUUAACAAUUUAU   82

2.5 Sequence 1488 from Patent EP2559767 NA coding protein psRNATarget
HI403363.1
ncRNA:24   AUCAAAGGCAUAAAAUGUUAAAUA   1
  ||*|||||*|||||*|||||||||
targets:59   UAAUUUCCCUAUUUAACAAUUUAU   82

2.5 Sequence 1488 from Patent EP2074227 NA coding protein psRNATarget
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